Case 2 (A.1.NmC2): PP431249.1
| Target: 83 samples | Number of changes: 42 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 28-29, 37-38 | BC BR coord: 6055 - 6056, 9295 - 9296 |
| Direction L1: >> | Initial region span: 1-28,29-37,38-42 | Gap history (edge excluded): 28-38 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.55e-03 | |
| Rec. model vs L1: 3.55e-03 | Rec. model vs L2: 2.28e-26 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
28 |
28.439834 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
29 |
0.829987 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
38 |
0.000000 |
-5.810408 |
53.620815 |
1.307027e-03 |
* |
|
|
| A.1.NmC1 |
0 |
38 |
-1.197639 |
-37.418671 |
116.837341 |
2.444759e-17 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
38 |
4.270669 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 923_G|T, 1265_A|G, 1398_C|T, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3080_T|C, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3911_A|G, 3989_T|C, 5651_C|T, 5937_T|C, 6008_C|T, 6545_C|T, 6908_T|C, 6983_A|G, 7064_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8250_C|A, 8474_C|T, 9296_C|T,
9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C
Case 3 (A.1.NmC1): MT377503.1
| Target: 181 samples | Number of changes: 155 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 9-10, 102-103 | BC BR coord: 814 - 815, 6580 - 6581 |
| Direction L1: << | Initial region span: 1-9,10-46,129-155 | Gap history (edge excluded): 9-129 -> 46-129 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.09e-21 | |
| Rec. model vs L1: 2.96e-41 | Rec. model vs L2: 4.67e-33 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
9 |
3.359009 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
46 |
0.784264 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
10 |
0.000000 |
-729.844073 |
1695.688146 |
8.096071e-310 |
|
|
|
| A.1.NmC1 |
0 |
10 |
-1.832966 |
-66.399428 |
368.798855 |
1.093394e-21 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
129 |
21.721407 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 423_G|A, 455_G|A, 467_T|C, 479_G|A, 523_A|G, 558_T|C, 653_G|A, 803_A|G, 884_A|G, 974_C|T, 1115_T|C, 1175_A|G, 1211_T|C, 1370_G|A, 1616_C|T, 1718_C|T, 1745_G|A, 1896_T|C, 1902_A|G,
2060_T|A, 2066_C|T, 2178_C|T, 2207_A|G, 2225_A|G, 2333_T|C, 2375_C|T, 2411_C|T, 2519_G|A, 2525_G|A, 2555_T|C, 2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2724_T|C, 2726_G|A, 2756_T|A, 2819_G|A,
2846_G|A, 2925_G|A, 3014_T|C, 3038_T|C, 3041_T|A, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A, 3350_G|A, 3518_C|T, 3534_G|A, 3641_C|T,
3731_C|T, 3885_T|C, 3989_T|C, 3992_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4286_C|T, 4295_A|G, 4319_G|A, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4652_A|G, 4733_T|C, 4790_A|G, 4850_C|T, 4952_C|T,
4994_G|A, 5000_T|C, 5030_C|A, 5060_T|C, 5177_G|A, 5198_T|C, 5267_T|C, 5279_A|G, 5324_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5546_T|C, 5591_T|C, 5612_T|C, 5744_A|G, 5828_T|C, 5937_T|C, 6056_C|T,
6101_T|C, 6155_A|G, 6164_C|T, 6275_A|T, 6470_G|A, 6473_T|A, 6684_A|C, 6807_T|C, 6890_A|G, 6911_C|T, 6983_A|G, 7037_C|T, 7050_T|C, 7079_A|G, 7290_G|A, 7451_A|C, 7517_C|T, 7574_C|T, 7633_T|C,
7713_T|C, 7784_G|A, 7805_T|C, 7817_G|A, 7887_T|C, 7931_T|C, 8007_G|A, 8105_C|T, 8408_T|C, 8516_A|G, 8606_C|T, 8630_AA|GG, 8696_C|T, 8924_G|C, 8927_G|C, 8930_G|A, 8932_C|A, 8939_G|C, 8991_C|T,
9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9509_T|C, 9527_A|G, 9612_T|C, 9728_A|G, 9752_G|A, 9809_C|T, 9953_A|G, 10004_T|C, 10163_T|C, 10184_C|T, 10208_G|A, 10289_G|A,
10392_A|G, 10477_T|C, 10561_T|C
Case 3 (A.1.NmC1): KY241700.1
| Target: 181 samples | Number of changes: 136 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 41-42, 87-88 | BC BR coord: 4060 - 4061, 4453 - 4454 |
| Direction L1: << | Initial region span: 1-41,42-87,88-136 | Gap history (edge excluded): 41-88 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.48e-27 | |
| Rec. model vs L1: 2.64e-28 | Rec. model vs L2: 1.55e-119 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
41 |
48.007145 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
42 |
6.214385 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
87 |
-1.192791 |
-442.187130 |
978.374260 |
1.829592e-195 |
|
|
|
| A.1.NmC1 |
0 |
87 |
-1.972447 |
-55.045602 |
204.091204 |
2.483820e-27 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
88 |
67.370279 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 272_A|G, 523_A|G, 558_T|C, 653_G|A, 803_A|G, 815_A|G, 1175_A|G, 1238_C|T, 1241_T|C, 1304_C|A, 1406_T|C, 1616_C|T, 1865_T|C, 1991_T|C, 2192_C|T, 2375_C|T, 2405_T|C, 2525_G|A,
2654_C|T, 2681_G|A, 2724_T|C, 2732_G|A, 2799_T|C, 2925_G|A, 3032_A|T, 3059_G|A, 3070_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3377_A|G, 3518_C|T, 3534_G|A, 3731_C|T,
3899_C|T, 3945_T|C, 3989_T|C, 4061_A|G, 4067_T|G, 4076_C|T, 4079_G|A, 4083_T|A, 4085_T|C, 4097_T|C, 4103_G|A, 4106_A|G, 4112_C|T, 4128_T|C, 4130_A|G, 4152_C|T, 4154_A|G, 4157_C|A, 4167_C|G,
4169_G|A, 4172_C|A, 4178_C|T, 4181_C|T, 4184_C|T, 4190_G|A, 4196_G|A, 4202_G|A, 4238_C|T, 4244_A|T, 4253_T|C, 4268_C|T, 4272_T|C, 4277_T|C, 4286_C|T, 4298_T|C, 4301_A|T, 4313_G|A, 4322_C|T,
4325_G|A, 4328_C|A, 4331_TC|CT, 4346_T|C, 4349_C|T, 4358_A|G, 4412_A|G, 4415_T|C, 4439_C|T, 4445_C|T, 4448_T|C, 4454_G|A, 4457_A|G, 4520_C|T, 4523_G|A, 4733_T|C, 5000_T|C, 5060_T|C, 5245_A|C,
5288_C|T, 5375_A|G, 5387_C|T, 5636_A|G, 5675_T|C, 5744_A|G, 5937_T|C, 6056_C|T, 6104_T|C, 6363_C|T, 6410_T|C, 6506_A|G, 6581_G|A, 6684_A|C, 6983_A|G, 7050_T|C, 7451_A|C, 7517_C|T, 7633_T|C,
7652_C|T, 7805_T|C, 7860_T|C, 8007_G|A, 8312_T|A, 8408_T|C, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9440_T|G, 9455_G|A, 9500_T|C, 9728_A|G, 9752_G|A, 9809_C|T, 9953_A|G, 10208_G|A, 10289_G|A,
10392_A|G, 10477_T|C, 10561_T|C
Case 3 (A.1.NmC1): KY241712.1
| Target: 181 samples | Number of changes: 141 | |
| BC: A.1 + A.1.NmC1 | BC BR: 21-22 | BC BR coord: 427 - 428 |
| Direction L1: << | Initial region span: 1-15,66-141 | Gap history (edge excluded): 15-66 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.09e-104 | Rec. model vs L2: 1.55e-06 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
15 |
-7.435613 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
66 |
96.59115 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 40_TT|CC, 50_A|G, 56_G|A, 122_A|G, 179_G|A, 181_G|A, 188_T|G, 191_G|A, 194_C|T, 204_C|T, 233_G|A, 242_G|A, 248_C|T, 254_A|G, 257_T|A, 272_A|G, 299_T|C, 302_C|T, 308_T|C, 320_A|C, 371_G|T,
523_A|G, 558_T|C, 653_G|A, 803_A|G, 815_A|G, 1175_A|G, 1238_C|T, 1241_T|C, 1304_C|A, 1406_T|C, 1616_C|T, 1646_A|G, 1655_C|T, 1697_A|G, 1701_C|T, 1709_G|A, 1739_T|C, 1757_T|C, 1769_A|C,
1781_C|T, 1784_T|C, 1796_G|A, 1825_G|A, 1831_C|T, 1841_C|T, 1865_T|C, 1967_A|G, 1973_C|T, 1991_T|C, 1998_G|A, 2000_T|C, 2005_CT|TC, 2027_A|G, 2030_T|C, 2045_G|A, 2049_T|C, 2060_T|C, 2069_A|G,
2072_C|T, 2093_T|A, 2103_C|T, 2108_A|G, 2114_T|C, 2129_C|T, 2192_C|T, 2375_C|T, 2405_T|C, 2525_G|A, 2654_C|T, 2681_G|A, 2724_T|C, 2732_G|A, 2799_T|C, 2925_G|A, 3032_A|T, 3059_G|A, 3070_T|C,
3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3377_A|G, 3518_C|T, 3534_G|A, 3731_C|T, 3899_C|T, 3945_T|C, 3989_T|C, 4085_T|C, 4169_G|A, 4328_C|T, 4454_G|A, 4520_C|T, 4523_G|A,
4733_T|C, 5000_T|C, 5060_T|C, 5288_C|T, 5375_A|G, 5387_C|T, 5636_A|G, 5675_T|C, 5744_A|G, 5937_T|C, 6056_C|T, 6104_T|C, 6363_C|T, 6410_T|C, 6506_A|G, 6581_G|A, 6684_A|C, 6983_A|G, 7050_T|C,
7451_A|C, 7517_C|T, 7633_T|C, 7652_C|T, 7805_T|C, 8007_G|A, 8312_T|A, 8408_T|C, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9440_T|G, 9455_G|A, 9500_T|C, 9728_A|G, 9752_G|A, 9809_C|T, 9953_A|G,
10208_G|A, 10289_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10721_C|A
Case 3 (A.1.NmC1): PP626402.1
| Target: 181 samples | Number of changes: 108 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 99-100, 104-105 | BC BR coord: 9751 - 9752, 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-99,100-104,105-108 | Gap history (edge excluded): 99-105 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.05e-04 | |
| Rec. model vs L1: 1.16e-06 | Rec. model vs L2: 1.83e-101 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
99 |
66.6587 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
104 |
0.547984 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
100 |
0.000000 |
-52.421981 |
124.843962 |
9.895125e-24 |
|
|
|
| A.1.NmC1 |
0 |
100 |
-1.718788 |
-8.616938 |
37.233877 |
1.046384e-04 |
* |
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
105 |
5.321986 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 272_A|G, 281_A|G, 338_T|C, 437_C|T, 523_A|G, 536_G|A, 558_T|C, 602_C|T, 653_G|A, 662_T|C, 803_A|G, 942_T|C, 1175_A|G, 1241_T|C, 1367_C|T, 1430_G|A, 1487_G|A, 1616_C|T, 1739_T|C,
2030_T|C, 2375_C|T, 2432_C|T, 2525_G|A, 2654_C|T, 2681_G|A, 2724_T|C, 2732_G|A, 2879_T|C, 2925_G|A, 2969_C|T, 3059_G|A, 3106_A|G, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C,
3332_G|A, 3534_G|A, 3731_C|T, 3989_T|C, 3995_C|T, 4085_T|C, 4307_G|A, 4328_C|T, 4400_C|T, 4454_G|A, 4523_G|A, 4607_A|G, 5000_T|C, 5060_T|C, 5192_C|T, 5375_A|G, 5387_C|T, 5456_G|A, 5636_A|G,
5744_A|G, 5828_T|C, 5918_T|C, 5937_T|C, 6056_C|T, 6185_T|C, 6227_A|G, 6363_C|T, 6575_A|G, 6581_G|A, 6684_A|C, 6728_T|C, 6981_.|G, 6984_G|A, 6986, 7050_T|C, 7224_T|C, 7409_A|G, 7451_A|C,
7517_C|T, 7633_T|C, 7751_A|G, 7763_C|T, 7793_C|T, 7805_T|C, 7820_A|G, 8007_G|A, 8217_T|C, 8360_A|G, 8408_T|C, 8711_A|G, 8789_T|C, 8978_C|T, 9017_T|C, 9305_C|T, 9353_T|C, 9398_A|G, 9434_A|G,
9440_T|G, 9455_G|A, 9728_A|G, 9803_C|T, 9812_C|T, 9824_T|C, 10159_C|T, 10262_T|C, 10289_G|A, 10392_A|G, 10477_T|C, 10561_T|C
Case 3 (A.1.NmC1): MT377491.2
| Target: 181 samples | Number of changes: 107 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 98-99, 103-104 | BC BR coord: 9751 - 9752, 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-98,99-103,104-107 | Gap history (edge excluded): 98-104 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.05e-04 | |
| Rec. model vs L1: 1.16e-06 | Rec. model vs L2: 4.91e-95 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
98 |
64.719124 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
103 |
0.547984 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
99 |
0.000000 |
-52.421981 |
124.843962 |
9.895125e-24 |
|
|
|
| A.1.NmC1 |
0 |
99 |
-1.718788 |
-8.616938 |
37.233877 |
1.046384e-04 |
* |
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
104 |
5.321986 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 272_A|G, 281_A|G, 338_T|C, 437_C|T, 523_A|G, 536_G|A, 558_T|C, 602_C|T, 653_G|A, 662_T|C, 803_A|G, 942_T|C, 1175_A|G, 1241_T|C, 1367_C|T, 1430_G|A, 1487_G|A, 1616_C|T, 1739_T|C,
2030_T|C, 2375_C|T, 2432_C|T, 2525_G|A, 2654_C|T, 2681_G|A, 2724_T|C, 2732_G|A, 2879_T|C, 2925_G|A, 2969_C|T, 3059_G|A, 3106_A|G, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C,
3332_G|A, 3534_G|A, 3731_C|T, 3989_T|C, 3995_C|T, 4085_T|C, 4307_G|A, 4328_C|T, 4400_C|T, 4454_G|A, 4523_G|A, 4607_A|G, 5000_T|C, 5060_T|C, 5192_C|T, 5375_A|G, 5387_C|T, 5456_G|A, 5636_A|G,
5744_A|G, 5828_T|C, 5918_T|C, 5937_T|C, 6056_C|T, 6185_T|C, 6227_A|G, 6363_C|T, 6575_A|G, 6581_G|A, 6684_A|C, 6728_T|C, 6981_.|G, 6984_G|A, 6986, 7050_T|C, 7224_T|C, 7409_A|G, 7451_A|C,
7517_C|T, 7633_T|C, 7751_A|G, 7763_C|T, 7793_C|T, 7805_T|C, 8007_G|A, 8217_T|C, 8360_A|G, 8408_T|C, 8711_A|G, 8789_T|C, 8978_C|T, 9017_T|C, 9305_C|T, 9353_T|C, 9398_A|G, 9434_A|G, 9440_T|G,
9455_G|A, 9728_A|G, 9803_C|T, 9812_C|T, 9824_T|C, 10159_C|T, 10262_T|C, 10289_G|A, 10392_A|G, 10477_T|C, 10561_T|C
Case 3 (A.1.NmC1): MG807647.1
| Target: 181 samples | Number of changes: 109 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 100-101, 105-106 | BC BR coord: 9499 - 9500, 10163 - 10164 |
| Direction L1: >> | Initial region span: 1-100,101-102,106-109 | Gap history (edge excluded): 100-106 -> 102-106 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.67e-03 | |
| Rec. model vs L1: 3.35e-05 | Rec. model vs L2: 1.39e-44 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
100 |
23.420651 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
102 |
0.266565 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
101 |
0.000000 |
-41.455155 |
100.910310 |
3.358625e-18 |
|
* |
|
| A.1.NmC1 |
0 |
101 |
-1.634194 |
-7.145263 |
32.290526 |
2.671808e-03 |
* |
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
106 |
5.321986 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 76_T|A, 254_A|G, 272_A|G, 437_C|T, 523_A|G, 558_T|C, 653_G|A, 746_T|C, 803_A|G, 942_T|C, 1004_G|A, 1175_A|G, 1367_C|T, 1616_C|T, 1682_C|T, 1739_T|C, 2090_C|T, 2312_C|T, 2366_C|T, 2375_C|T,
2388_T|C, 2435_T|C, 2448_T|C, 2525_G|A, 2561_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2732_G|A, 2925_G|A, 3052_T|C, 3059_G|A, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3534_G|A,
3615_C|T, 3731_C|T, 3989_T|C, 4013_T|C, 4070_T|C, 4085_T|C, 4130_A|G, 4205_C|T, 4328_C|T, 4382_T|C, 4400_C|T, 4454_G|A, 4478_C|T, 4493_C|T, 4523_G|A, 4607_A|G, 5000_T|C, 5060_T|C, 5066_C|T,
5375_A|G, 5387_C|T, 5390_C|T, 5636_A|G, 5744_A|G, 5828_T|C, 5937_T|C, 6056_C|T, 6152_C|T, 6363_C|T, 6575_A|G, 6581_G|A, 6590_A|G, 6650_A|G, 6684_A|C, 6728_T|C, 6897_C|T, 6926_A|G, 6983_AG|GA,
7050_T|C, 7064_T|C, 7451_A|C, 7496_G|A, 7499_T|C, 7517_C|T, 7580_A|G, 7633_T|C, 7805_T|C, 7967_G|A, 8007_G|A, 8360_A|G, 8408_T|C, 8474_C|T, 8879_T|C, 8882_T|C, 9017_T|C, 9305_C|T, 9353_T|C,
9427_A|G, 9434_A|G, 9440_T|G, 9455_G|A, 9635_G|A, 9722_T|C, 9728_A|G, 9806_C|T, 10070_A|G, 10289_G|A, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): OQ661914.1
| Target: 995 samples | Number of changes: 194 | |
| BC: A.1 + A.1 | BC BR: 13-14 | BC BR coord: 754 - 755 |
| Direction L1: << | Initial region span: 1-6,25-194 | Gap history (edge excluded): 6-25 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.70e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.050267 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
25 |
6.813085 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 278_G|A, 293_A|G, 423_G|A, 467_T|C, 475_C|T, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 665_C|T, 710_A|G, 719_T|C, 803_A|G, 815_A|G, 896_C|T, 986_C|T, 1055_A|G, 1070_C|T, 1175_A|G,
1292_T|C, 1322_A|G, 1343_C|T, 1398_C|T, 1403_A|G, 1436_T|C, 1457_T|C, 1616_C|T, 1655_C|T, 1694_A|G, 1697_A|G, 1781_C|T, 1842_T|C, 1883_C|T, 1922_C|T, 2030_T|C, 2066_C|T, 2135_C|T, 2285_C|T,
2375_C|T, 2394_A|G, 2411_C|T, 2468_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2768_A|G, 2795_G|A, 2852_G|A, 2864_A|G, 2925_G|A, 2945_C|T, 2978_T|C, 2984_T|C, 3038_T|C,
3052_T|C, 3059_G|A, 3071_A|G, 3083_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3242_C|T, 3254_T|C, 3279_A|G, 3305_G|A, 3332_G|A, 3338_T|C, 3518_C|T, 3530_G|A, 3534_G|A,
3608_G|A, 3710_T|C, 3718_C|T, 3720_A|G, 3723_T|C, 3731_C|T, 3806_A|T, 3854_A|G, 3885_T|C, 3902_C|T, 3989_T|C, 4085_T|C, 4106_A|G, 4238_C|T, 4295_A|G, 4412_A|G, 4454_G|A, 4481_G|A, 4493_C|T,
4523_G|A, 4592_A|G, 4595_C|T, 4733_T|C, 4751_T|C, 4785_C|T, 4877_C|T, 4901_G|A, 4907_G|A, 4988_G|A, 4995_C|T, 5000_T|C, 5036_C|T, 5060_T|C, 5066_C|T, 5093_T|C, 5369_C|T, 5375_A|G, 5387_C|T,
5414_T|C, 5591_T|C, 5612_T|C, 5657_C|A, 5729_C|T, 5828_T|C, 5900_C|T, 5937_T|C, 6005_C|T, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6269_C|T, 6287_T|C, 6363_C|T, 6422_T|C, 6443_G|A, 6473_T|C,
6533_A|G, 6545_C|T, 6566_A|G, 6629_T|C, 6678_T|C, 6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7115_A|G, 7157_C|T, 7451_A|C, 7517_C|T, 7586_T|C, 7633_T|C, 7679_A|G, 7713_T|C,
7775_C|T, 7805_T|C, 7869_C|A, 7961_A|G, 8007_GT|AC, 8105_C|T, 8123_T|C, 8219_G|A, 8342_G|A, 8408_T|C, 8516_A|G, 8606_C|T, 8813_G|A, 8897_A|G, 9017_T|C, 9131_A|G, 9176_C|T, 9209_A|G, 9305_C|T,
9353_T|C, 9434_A|G, 9455_G|A, 9527_A|G, 9623_C|T, 9641_AC|GA, 9677_G|A, 9830_G|A, 9833_C|T, 9882_C|A, 9884_G|A, 9896_T|A, 10151_C|T, 10187_T|C, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A,
10392_A|G, 10477_T|C, 10507_A|G, 10509_G|A
Case 4 (A.1): KU681082.3
| Target: 995 samples | Number of changes: 240 | |
| BC: A.1 + A.1 | BC BR: 119-120 | BC BR coord: 5287 - 5288 |
| Direction L1: << | Initial region span: 1-79,126-240 | Gap history (edge excluded): 79-126 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.93e-10 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
79 |
3.515692 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
126 |
11.430201 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 227_T|C, 254_A|G, 257_T|A, 434_T|C, 455_G|C, 467_T|C, 475_CG|TA, 523_A|G, 558_T|C, 578_T|C, 584_G|A, 639_C|T, 653_G|A, 674_T|C, 689_G|A, 707_C|T, 719_T|C, 803_A|G, 837_T|C, 848_C|T,
895_C|T, 917_C|T, 941_CT|TC, 1070_C|T, 1175_A|G, 1178_C|T, 1214_A|G, 1232_A|G, 1529_A|G, 1587_T|C, 1616_C|T, 1655_C|T, 1670_C|T, 1682_C|T, 1727_C|A, 1814_T|A, 1817_A|C, 1901_T|C, 1904_C|T,
2021_C|T, 2066_C|T, 2084_T|C, 2171_C|T, 2282_A|G, 2285_C|T, 2348_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2437_T|C, 2483_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2669_T|C, 2681_G|A, 2724_T|C,
2925_G|A, 2969_C|T, 3038_T|C, 3052_T|C, 3059_G|A, 3071_A|G, 3077_T|C, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3195_A|G, 3203_G|A, 3218_T|A, 3254_T|C, 3275_C|T, 3332_G|A, 3365_A|G, 3380_T|C,
3434_G|A, 3461_G|A, 3518_C|T, 3534_G|A, 3575_C|T, 3594_C|T, 3674_T|C, 3731_C|T, 3774_C|T, 3806_A|T, 3854_A|G, 3885_T|C, 3989_T|C, 4085_T|C, 4106_A|G, 4128_T|C, 4146_C|T, 4157_C|T, 4238_C|T,
4295_A|G, 4422_G|A, 4454_G|A, 4481_G|A, 4493_C|T, 4499_C|A, 4523_G|A, 4544_T|C, 4592_A|G, 4595_C|T, 4706_A|T, 4733_T|C, 4751_T|C, 4859_A|G, 4871_T|C, 4957_T|C, 4988_G|A, 5000_T|C, 5060_T|C,
5066_C|T, 5081_C|A, 5193_T|C, 5207_T|C, 5294_T|C, 5336_G|T, 5369_C|T, 5375_A|G, 5387_C|T, 5405_C|T, 5420_T|C, 5429_G|A, 5454_C|T, 5591_T|C, 5624_A|G, 5652_T|A, 5684_A|G, 5693_T|C, 5807_A|G,
5811_C|A, 5828_T|C, 5840_T|C, 5901_C|T, 5975_C|T, 6056_C|T, 6062_C|T, 6065_T|C, 6092_C|T, 6101_T|C, 6128_C|T, 6164_C|T, 6239_T|G, 6246_C|T, 6310_C|T, 6363_C|T, 6443_G|A, 6473_T|C, 6485_G|A,
6684_A|C, 6698_A|G, 6746_C|T, 6797_T|C, 6851_C|T, 6890_A|G, 6944_G|A, 6983_A|G, 6991_T|C, 7037_C|T, 7049_CT|TC, 7064_T|C, 7085_A|G, 7139_A|G, 7208_A|G, 7232_C|T, 7313_T|G, 7415_G|A, 7427_A|G,
7451_A|C, 7517_C|T, 7529_T|C, 7568_T|C, 7633_T|C, 7679_A|G, 7713_T|C, 7793_C|T, 7805_T|C, 7817_G|A, 7853_G|T, 7860_T|C, 7869_C|A, 7871_G|A, 7937_C|T, 7961_A|G, 8007_G|A, 8069_T|C, 8093_G|T,
8105_C|T, 8291_A|G, 8408_T|C, 8516_A|G, 8606_C|T, 8702_C|T, 8813_G|A, 8819_A|G, 8951_C|T, 8993_C|T, 9011_C|T, 9017_T|C, 9119_T|C, 9149_C|T, 9158_C|T, 9176_C|T, 9197_G|A, 9272_C|T, 9305_C|T,
9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9509_T|C, 9518_A|G, 9527_A|G, 9591_T|C, 9617_G|A, 9642_C|A, 9677_G|A, 9818_G|A, 9827_C|T, 9884_G|A, 9893_C|A, 9896_T|A, 10031_C|T, 10109_G|A,
10133_G|A, 10166_G|A, 10199_G|A, 10241_C|T, 10244_C|T, 10262_T|C, 10268_C|T, 10281_G|A, 10334_A|G, 10361_T|C, 10392_A|G, 10561_T|C
Case 4 (A.1): KX694532.2
| Target: 995 samples | Number of changes: 137 | |
| BC: A.1 + A.1.NmC1 | BC BR: 131-132 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-5,134-137 | Gap history (edge excluded): 5-134 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.49e+09 | Rec. model vs L2: 2.12e-262 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.813045 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
134 |
1.925944 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 398_T|C, 423_G|A, 428_T|C, 467_T|C, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 908_T|C, 965_C|T, 974_C|T, 1175_A|G, 1211_T|C, 1328_T|C, 1391_G|A, 1520_G|A, 1616_C|T,
1709_G|A, 1718_C|T, 1763_A|G, 1896_T|C, 1922_C|T, 2066_C|T, 2375_C|T, 2411_C|T, 2519_G|A, 2522_G|A, 2525_G|A, 2537_T|C, 2576_G|A, 2606_C|T, 2648_T|G, 2681_G|A, 2724_T|C, 2846_G|A, 2925_G|A,
3008_A|G, 3014_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A, 3534_G|A, 3731_C|T, 3734_C|T, 3770_T|A, 3870_T|C, 3885_T|C,
3989_T|C, 4076_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4244_A|G, 4295_A|G, 4403_A|G, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4733_T|C, 4886_G|A, 4994_G|A, 5000_T|C, 5060_T|C, 5369_C|T, 5375_A|G,
5387_C|T, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C, 5937_T|C, 6008_C|T, 6056_C|T, 6068_A|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|T, 6363_C|T, 6473_T|A, 6684_A|C, 6807_T|C, 6836_A|G, 6851_C|T,
6890_A|G, 6911_C|T, 6935_G|A, 6983_A|G, 7037_C|T, 7043_T|C, 7049_C|T, 7079_A|G, 7136_T|C, 7358_T|C, 7451_A|C, 7517_C|T, 7633_T|C, 7805_T|C, 7847_A|G, 7964_A|G, 8007_G|A, 8105_C|T, 8408_T|C,
8516_A|G, 8606_C|T, 8787_G|A, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9491_T|C, 9503_C|T, 9527_A|G, 9821_C|T, 9935_A|G, 10127_T|C, 10163_T|A, 10262_T|C, 10361_T|C, 10376_G|A,
10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): KF993678.1
| Target: 995 samples | Number of changes: 132 | |
| BC: A.1 + A.1 | BC BR: 122-123 | BC BR coord: 9439 - 9440 |
| Direction L1: << | Initial region span: 1-5,124-132 | Gap history (edge excluded): 5-124 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.71e-09 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.813045 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
124 |
0.9126 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 398_T|C, 423_G|A, 428_T|C, 467_T|C, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 908_T|C, 965_C|T, 974_C|T, 1175_A|G, 1211_T|C, 1328_T|C, 1391_G|A, 1520_G|A, 1616_C|T,
1709_G|A, 1718_C|T, 1763_A|G, 1896_T|C, 1922_C|T, 2066_C|T, 2375_C|T, 2411_C|T, 2519_G|A, 2522_G|A, 2525_G|A, 2537_T|C, 2576_G|A, 2606_C|T, 2648_T|G, 2681_G|A, 2724_T|C, 2846_G|A, 2925_G|A,
3008_A|G, 3014_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A, 3534_G|A, 3731_C|T, 3734_C|T, 3770_T|A, 3870_T|C, 3885_T|C,
3989_T|C, 4076_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4244_A|G, 4295_A|G, 4403_A|G, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4733_T|C, 4886_G|A, 4994_G|A, 5000_T|C, 5060_T|C, 5369_C|T, 5375_A|G,
5387_C|T, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C, 5937_T|C, 6008_C|T, 6056_C|T, 6068_A|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|T, 6363_C|T, 6473_T|A, 6684_A|C, 6807_T|C, 6836_A|G, 6851_C|T,
6890_A|G, 6911_C|T, 6935_G|A, 6983_A|G, 7037_C|T, 7043_T|C, 7049_C|T, 7079_A|G, 7136_T|C, 7358_T|C, 7451_A|C, 7517_C|T, 7633_T|C, 7805_T|C, 7847_A|G, 7964_A|G, 8007_G|A, 8105_C|T, 8408_T|C,
8516_A|G, 8606_C|T, 8787_G|A, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9491_T|C, 9503_C|T, 9527_A|G, 9821_C|T, 9935_A|G, 10127_T|C, 10163_T|A, 10262_T|C, 10349_T|C
Case 4 (A.1): KX051560.1
| Target: 995 samples | Number of changes: 129 | |
| BC: A.1 + A.1.NmC1 | BC BR: 125-126 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-4,127-129 | Gap history (edge excluded): 4-127 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.53e+07 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.643443 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
127 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 169_T|C, 254_A|G, 423_G|A, 503_CT|TC, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 719_T|C, 764_C|T, 803_A|G, 830_A|T, 842_T|C, 962_T|C, 1175_A|G, 1263_T|C, 1346_G|A, 1424_T|C, 1526_T|C, 1592_T|C,
1616_C|T, 1691_C|T, 1922_C|T, 1985_T|C, 2066_C|T, 2132_T|A, 2210_T|C, 2375_C|T, 2411_C|T, 2525_G|A, 2606_C|T, 2613_T|C, 2648_T|G, 2654_C|T, 2669_T|G, 2681_G|A, 2724_T|C, 2858_C|T, 2915_A|G,
2925_G|A, 2969_C|T, 3038_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3236_G|A, 3254_T|C, 3332_G|A, 3335_C|T, 3518_C|T, 3534_G|A, 3608_G|A, 3731_C|T, 3838_AT|CC, 3954_T|C,
3989_T|C, 4013_T|C, 4085_T|C, 4092_C|T, 4106_A|G, 4140_A|G, 4148_G|A, 4200_T|C, 4422_G|A, 4439_C|T, 4454_G|A, 4523_G|A, 4538_C|T, 4697_T|C, 4733_T|C, 4901_G|A, 5000_T|C, 5060_T|C, 5363_C|T,
5369_C|T, 5375_A|G, 5387_C|T, 5564_C|A, 5591_T|C, 5678_T|C, 5813_T|C, 5828_T|C, 5867_T|C, 5937_T|C, 6056_C|T, 6107_C|T, 6131_G|A, 6363_C|T, 6462_A|C, 6684_A|C, 6908_T|C, 6960_C|T, 6983_A|G,
7037_C|T, 7050_T|C, 7206_A|T, 7451_A|C, 7478_C|T, 7517_C|T, 7592_T|C, 7633_T|C, 7805_T|C, 8007_G|A, 8018_A|G, 8249_C|T, 8372_C|T, 8408_T|C, 8555_C|T, 8570_T|C, 8606_C|T, 8759_G|A, 8780_T|C,
9017_T|C, 9215_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9527_A|G, 9797_T|C, 9950_G|C, 10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): OQ661915.1
| Target: 995 samples | Number of changes: 193 | |
| BC: A.1 + A.1 | BC BR: 13-14 | BC BR coord: 754 - 755 |
| Direction L1: << | Initial region span: 1-6,25-193 | Gap history (edge excluded): 6-25 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.70e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.050267 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
25 |
6.643894 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 278_G|A, 293_A|G, 423_G|A, 467_T|C, 475_C|T, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 665_C|T, 710_A|G, 719_T|C, 803_A|G, 815_A|G, 896_C|T, 986_C|T, 1055_A|G, 1070_C|T, 1175_A|G,
1292_T|C, 1322_A|G, 1343_C|T, 1398_C|T, 1403_A|G, 1436_T|C, 1457_T|C, 1616_C|T, 1655_C|T, 1694_A|G, 1697_A|G, 1781_C|T, 1842_T|C, 1883_C|T, 1922_C|T, 2030_T|C, 2066_C|T, 2135_C|T, 2285_C|T,
2375_C|T, 2394_A|G, 2411_C|T, 2468_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2768_A|G, 2795_G|A, 2852_G|A, 2864_A|G, 2925_G|A, 2945_C|T, 2984_T|C, 3038_T|C, 3052_T|C,
3059_G|A, 3071_A|G, 3083_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3242_C|T, 3254_T|C, 3279_A|G, 3305_G|A, 3332_G|A, 3338_T|C, 3518_C|T, 3530_G|A, 3534_G|A, 3608_G|A,
3710_T|C, 3718_C|T, 3720_A|G, 3723_T|C, 3731_C|T, 3806_A|T, 3854_A|G, 3885_T|C, 3902_C|T, 3989_T|C, 4085_T|C, 4106_A|G, 4238_C|T, 4295_A|G, 4412_A|G, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A,
4592_A|G, 4595_C|T, 4733_T|C, 4751_T|C, 4785_C|T, 4877_C|T, 4901_G|A, 4907_G|A, 4988_G|A, 4995_C|T, 5000_T|C, 5036_C|T, 5060_T|C, 5066_C|T, 5093_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5414_T|C,
5591_T|C, 5612_T|C, 5657_C|A, 5729_C|T, 5828_T|C, 5900_C|T, 5937_T|C, 6005_C|T, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6269_C|T, 6287_T|C, 6363_C|T, 6422_T|C, 6443_G|A, 6473_T|C, 6533_A|G,
6545_C|T, 6566_A|G, 6629_T|C, 6678_T|C, 6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7115_A|G, 7157_C|T, 7451_A|C, 7517_C|T, 7586_T|C, 7633_T|C, 7679_A|G, 7713_T|C, 7775_C|T,
7805_T|C, 7869_C|A, 7961_A|G, 8007_GT|AC, 8105_C|T, 8123_T|C, 8219_G|A, 8342_G|A, 8408_T|C, 8516_A|G, 8606_C|T, 8813_G|A, 8897_A|G, 9017_T|C, 9131_A|G, 9176_C|T, 9209_A|G, 9305_C|T, 9353_T|C,
9434_A|G, 9455_G|A, 9527_A|G, 9623_C|T, 9641_AC|GA, 9677_G|A, 9830_G|A, 9833_C|T, 9882_C|A, 9884_G|A, 9896_T|A, 10151_C|T, 10187_T|C, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A, 10392_A|G,
10477_T|C, 10507_A|G, 10509_G|A
Case 4 (A.1): KX051561.1
| Target: 995 samples | Number of changes: 137 | |
| BC: A.1 + A.1.NmC1 | BC BR: 131-132 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-3,134-137 | Gap history (edge excluded): 3-134 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.41e+13 | Rec. model vs L2: 3.67e-261 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
3 |
0.386836 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
134 |
1.925944 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
123 |
0.758465 |
-1.268593 |
16.537187 |
1.328857e+08 |
* |
|
|
|
Target sequence
, 254_A|G, 423_G|A, 467_T|C, 523_A|G, 558_T|C, 575_T|C, 653_G|A, 719_T|C, 749_A|G, 803_A|G, 810_T|C, 884_A|G, 1175_A|G, 1325_C|T, 1616_C|T, 1718_C|T, 1896_T|C, 1922_C|T, 2060_T|A, 2066_C|T,
2207_A|G, 2375_C|T, 2411_C|T, 2519_G|A, 2525_G|A, 2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2717_C|T, 2724_T|C, 2804_C|T, 2846_G|A, 2873_G|A, 2925_G|A, 2973_G|A, 3038_T|C, 3059_G|A,
3110_T|C, 3131_G|A, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A, 3518_C|T, 3534_G|A, 3720_A|G, 3731_C|T, 3885_T|C, 3989_T|C, 4085_T|C, 4106_A|G, 4238_C|T, 4287_G|A,
4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4652_A|G, 4688_A|G, 4733_T|C, 4850_C|T, 4916_C|T, 4952_C|T, 5000_T|C, 5060_T|C, 5189_A|G, 5198_T|C, 5369_C|T, 5375_A|G, 5387_C|T,
5450_T|C, 5546_T|C, 5585_C|T, 5591_T|C, 5744_A|G, 5828_T|C, 5937_T|C, 6056_C|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|T, 6363_C|T, 6473_T|A, 6684_A|C, 6755_C|T, 6807_T|C, 6890_A|G, 6911_C|T,
6983_A|G, 6989_C|T, 7037_C|T, 7050_T|C, 7064_T|C, 7079_A|G, 7358_T|C, 7451_A|C, 7517_C|T, 7633_T|C, 7766_C|T, 7769_G|A, 7805_T|C, 8007_G|A, 8105_C|T, 8351_C|T, 8408_T|C, 8516_A|G, 8606_C|T,
8651_C|T, 9017_T|C, 9098_T|C, 9137_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9503_C|T, 9509_T|C, 9527_A|G, 9582_C|T, 9591_T|C, 9623_C|T, 9992_A|G, 10071_A|C, 10161_G|A, 10376_G|A, 10382_A|G,
10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): PP115590.1
| Target: 995 samples | Number of changes: 114 | |
| BC: A.1 + A.1.NmC1 | BC BR: 108-109 | BC BR coord: 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-3,110-114 | Gap history (edge excluded): 3-110 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.29e+12 | Rec. model vs L2: 5.07e-297 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
3 |
0.120431 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
110 |
4.261319 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 326_G|A, 423_G|A, 558_T|C, 653_G|A, 746_T|C, 803_A|G, 998_C|T, 1175_A|G, 1598_T|C, 1616_C|T, 1656_G|A, 2079_A|G, 2287_C|T, 2291_C|T, 2375_C|T, 2411_C|T, 2486_T|C, 2525_G|A,
2606_C|T, 2623_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 2975_A|T, 3018_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3127_A|G, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3518_C|T,
3534_G|A, 3572_C|T, 3704_C|T, 3731_C|T, 3740_C|T, 3783_A|G, 3989_T|C, 3992_C|T, 4085_T|C, 4106_A|G, 4424_C|T, 4454_G|A, 4523_G|A, 4601_G|A, 4766_C|T, 5000_T|C, 5003_C|T, 5060_T|C, 5084_A|G,
5099_T|C, 5258_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5543_G|A, 5591_T|C, 5678_T|C, 5702_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6310_C|T, 6518_A|G, 6684_A|C, 6785_T|C, 6848_T|C, 6983_A|G, 7028_A|G,
7031_T|C, 7050_T|C, 7250_C|T, 7397_A|T, 7451_A|C, 7496_G|A, 7517_C|T, 7586_T|C, 7633_T|C, 7805_T|C, 7835_C|T, 8007_G|A, 8208_A|G, 8408_T|C, 8606_C|T, 8753_T|C, 8933_T|C, 8950_A|G, 9017_T|C,
9146_G|A, 9149_C|T, 9305_C|T, 9324_C|T, 9353_T|C, 9362_G|A, 9434_A|G, 9455_G|A, 9800_C|T, 9890_C|T, 9941_A|G, 10010_T|C, 10188_T|C, 10376_G|A, 10392_A|G, 10460_A|G, 10477_T|C, 10561_T|C,
10744_C|T
Case 4 (A.1): KU681081.3
| Target: 995 samples | Number of changes: 110 | |
| BC: A.1 + A.1.NmC1 | BC BR: 105-106 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-3,107-110 | Gap history (edge excluded): 3-107 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.29e+07 | Rec. model vs L2: 5.31e-278 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
3 |
0.120431 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
107 |
4.261319 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 326_G|A, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 746_T|C, 803_A|G, 998_C|T, 1175_A|G, 1598_T|C, 1616_C|T, 1656_G|A, 2079_A|G, 2287_C|T, 2291_C|T, 2375_C|T, 2411_C|T, 2486_T|C,
2525_G|A, 2606_C|T, 2623_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3018_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3127_A|G, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3518_C|T,
3534_G|A, 3572_C|T, 3704_C|T, 3731_C|T, 3740_C|T, 3783_A|G, 3989_T|C, 3992_C|T, 4085_T|C, 4106_A|G, 4424_C|T, 4454_G|A, 4523_G|A, 4601_G|A, 4766_C|T, 5000_T|C, 5003_C|T, 5060_T|C, 5084_A|G,
5099_T|C, 5258_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5543_G|A, 5591_T|C, 5702_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6310_C|T, 6518_A|G, 6684_A|C, 6785_T|C, 6848_T|C, 6983_A|G, 7028_A|G, 7031_T|C,
7050_T|C, 7250_C|T, 7397_A|T, 7451_A|C, 7496_G|A, 7517_C|T, 7586_T|C, 7633_T|C, 7805_T|C, 8007_G|A, 8208_A|G, 8408_T|C, 8606_C|T, 8753_T|C, 8933_T|C, 9017_T|C, 9146_G|A, 9149_C|T, 9305_C|T,
9324_C|T, 9353_T|C, 9362_G|A, 9434_A|G, 9455_G|A, 9800_C|T, 9890_C|T, 9941_A|G, 10010_T|C, 10188_T|C, 10376_G|A, 10392_A|G, 10460_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): KX051562.1
| Target: 995 samples | Number of changes: 144 | |
| BC: A.1 + A.1.NmC1 | BC BR: 137-138 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-4,141-144 | Gap history (edge excluded): 4-141 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.28e+12 | Rec. model vs L2: 1.19e-104 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.523685 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
3 |
-9.920764 |
-1101.399642 |
2500.799283 |
0.0 |
|
* |
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
141 |
1.925944 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 50_A|G, 56_G|A, 254_A|G, 423_G|A, 455_G|A, 467_T|C, 479_G|A, 523_A|G, 558_T|C, 803_A|G, 884_A|G, 974_C|T, 1115_T|C, 1175_A|G, 1211_T|C, 1370_G|A, 1616_C|T, 1718_C|T, 1745_G|A, 1896_T|C,
1902_A|G, 2060_T|A, 2066_C|T, 2207_A|G, 2225_A|G, 2333_T|C, 2375_C|T, 2411_C|T, 2519_G|A, 2525_G|A, 2555_T|C, 2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2724_T|C, 2726_G|A, 2756_T|A, 2819_G|A,
2846_G|A, 2925_G|A, 3014_T|C, 3038_T|C, 3041_T|A, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A, 3518_C|T, 3534_G|A, 3641_C|T, 3731_C|T,
3885_T|C, 3989_T|C, 3992_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4286_C|T, 4295_A|G, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4652_A|G, 4733_T|C, 4790_A|G, 4850_C|T, 4952_C|T, 5000_T|C, 5060_T|C,
5177_G|A, 5198_T|C, 5267_T|C, 5279_A|G, 5324_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5546_T|C, 5591_T|C, 5612_T|C, 5744_A|G, 5828_T|C, 5937_T|C, 6056_C|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|T,
6470_G|A, 6473_T|A, 6684_A|C, 6807_T|C, 6890_A|G, 6911_C|T, 6983_A|G, 7037_C|T, 7050_T|C, 7079_A|G, 7451_A|C, 7517_C|T, 7574_C|T, 7633_T|C, 7713_T|C, 7784_G|A, 7805_T|C, 7887_T|C, 7931_T|C,
8007_G|A, 8105_C|T, 8408_T|C, 8516_A|G, 8606_C|T, 8630_AA|GG, 8696_C|T, 8991_C|T, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9509_T|C, 9527_A|G, 9558_C|T, 9560_A|G, 9591_T|C,
9695_T|C, 9767_T|A, 9809_C|T, 10310_G|A, 10337_T|G, 10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): KY558996.1
| Target: 995 samples | Number of changes: 32 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 7-8, 9-10 | BC BR coord: 1397 - 1398, 1990 - 1991 |
| Direction L1: << | Initial region span: 1-7,8-9,26-32 | Gap history (edge excluded): 7-26 -> 9-26 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.07e-01 | |
| Rec. model vs L1: 6.86e-02 | Rec. model vs L2: 2.35e-58 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.145129 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
9 |
2.473360 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
10 |
-0.970950 |
-1.206281 |
8.412562 |
0.025223 |
* |
* |
|
| A.1.NmC1 |
0 |
8 |
-1.160516 |
-2.987031 |
11.974061 |
0.004254 |
* |
* |
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
26 |
0.356493 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 616_C|T, 1232_A|G, 1298_T|C, 1364_C|T, 1387_A|T, 1398_C|T, 1616_C|T, 2330_A|G, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3731_C|T, 3989_T|C, 5937_T|C, 6983_A|G, 7370_A|T, 7451_A|C, 7633_T|C, 7805_T|C, 8420_G|A, 9305_C|T, 9353_T|C
Case 4 (A.1): MF352141.1
| Target: 995 samples | Number of changes: 33 | |
| BC: A.1 + A.1 | BC BR: 17-18 | BC BR coord: 3898 - 3899 |
| Direction L1: << | Initial region span: 1-3,18-33 | Gap history (edge excluded): 3-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.67e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
3 |
0.725053 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
18 |
1.575835 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 419_A|G, 1044_G|A, 1313_C|T, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2853_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3987_G|A, 4193_A|G,
5676_C|T, 5937_T|C, 6983_A|G, 6992_A|G, 7229_A|G, 7442_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8777_C|T, 9305_C|T, 9353_T|C, 9557_T|C, 10561_T|C
Case 4 (A.1): OQ727568.1
| Target: 995 samples | Number of changes: 33 | |
| BC: A.1 + A.1 | BC BR: 10-11 | BC BR coord: 3136 - 3137 |
| Direction L1: << | Initial region span: 1-4,17-33 | Gap history (edge excluded): 4-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.30e-09 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.350456 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
17 |
1.440617 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 479_G|A, 1044_G|A, 1313_C|T, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3534_G|A, 3692_T|C, 3731_C|T, 5676_C|T,
5921_T|C, 5937_T|C, 6224_A|G, 6308_C|T, 6606_T|C, 6930_T|C, 6957_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9305_C|T, 9353_T|C, 10561_T|C
Case 4 (A.1): KU707826.1
| Target: 995 samples | Number of changes: 37 | |
| BC: A.1 + A.1 | BC BR: 31-32 | BC BR coord: 9295 - 9296 |
| Direction L1: >> | Initial region span: 1-31,35-37 | Gap history (edge excluded): 31-35 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.03e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
31 |
2.070487 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
35 |
0.470661 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80, 254_A|G, 1034_T|C, 1433_C|T, 1475_G|A, 1616_C|T, 1904_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3566_T|C, 3731_C|T,
5315_A|G, 5937_T|C, 6671_T|C, 6803_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8213_A|G, 8327_C|T, 8978_C|T, 9242_C|T, 9305_C|T, 9344_G|A, 9353_T|C, 10181_T|C, 10386_A|G, 10561_T|C
Case 4 (A.1): KU497555.1
| Target: 995 samples | Number of changes: 43 | |
| BC: A.1 + A.1 | BC BR: 18-19 | BC BR coord: 3253 - 3254 |
| Direction L1: << | Initial region span: 1-7,33-43 | Gap history (edge excluded): 7-33 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.75e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
1.129671 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
33 |
1.481064 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 398_T|C, 443_T|C, 1061_A|G, 1533_C|T, 1616_C|T, 1756_G|C, 2375_C|T, 2534_C|T, 2603_C|T, 2681_G|A, 2714_C|T, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3731_C|T, 3882_C|T, 3989_T|C, 4472_T|C, 5081_C|A, 5495_T|C, 5937_T|C, 6026_T|C, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8207_T|C, 8558_G|A, 8599_A|T, 8840_G|A, 9305_C|T, 9353_T|C,
10268_C|T, 10378_A|G, 10451_C|T, 10467_A|T, 10561_T|C
Case 4 (A.1): KX446950.2
| Target: 995 samples | Number of changes: 45 | |
| BC: A.1 + A.1 | BC BR: 5-6 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-4,10-45 | Gap history (edge excluded): 4-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.89e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.452528 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
3.690812 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 637_T|C, 968_G|A, 1115_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3282_A|G, 3332_G|A, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7223_A|G, 7307_T|C, 7451_A|C, 7633_T|C, 7667_T|C,
7805_T|C, 8480_A|G, 9240_C|T, 9246_C|T, 9305_C|T, 9353_T|C, 10561_T|C
Case 4 (A.1): KY559032.1
| Target: 995 samples | Number of changes: 29 | |
| BC: A.1 + A.1 | BC BR: 6-7 | BC BR coord: 2653 - 2654 |
| Direction L1: << | Initial region span: 1-6,18-29 | Gap history (edge excluded): 6-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.98e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.492341 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
18 |
0.958487 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 467_T|C, 1616_C|T, 1853_C|T, 2375_C|T, 2613_T|C, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3731_C|T, 3821_T|C, 4784_G|A, 5937_T|C,
6223_A|G, 6851_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8798_G|A, 8950_A|G, 9305_C|T, 9353_T|C
Case 4 (A.1): KY648934.1
| Target: 995 samples | Number of changes: 46 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 3031 - 3032 |
| Direction L1: << | Initial region span: 1-9,17-46 | Gap history (edge excluded): 9-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.82e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
0.226118 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
17 |
3.881601 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1115_T|C, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3223_A|C, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3818_A|G,
3863_G|A, 3895_C|T, 4226_C|T, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5450_T|C, 5937_T|C, 6327_A|C, 6377_A|G, 6629_T|C, 6725_T|C, 6737_C|T, 6983_A|G, 7307_T|C, 7451_A|C,
7633_T|C, 7805_T|C, 9240_C|T, 9305_C|T, 9353_T|C, 9476_C|T, 9591_T|C, 10561_T|C
Case 4 (A.1): MN473454.1
| Target: 995 samples | Number of changes: 55 | |
| BC: A.1.NmC2 + A.1 | BC BR: 6-7 | BC BR coord: 1405 - 1406 |
| Direction L1: << | Initial region span: 1-4,31-55 | Gap history (edge excluded): 4-31 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.60e-146 | Rec. model vs L2: 1.92e+12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
4 |
-9.496088 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
31 |
1.620716 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 227_T|C, 254_A|G, 875_C|T, 881_G|T, 923_G|A, 1398_C|T, 1472_G|A, 1616_C|T, 1904_C|T, 2375_C|T, 2534_C|T, 2600_C|T, 2681_G|A, 2724_T|C, 2882_C|T, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A,
3218_T|A, 3323_G|A, 3332_G|A, 3534_G|A, 3566_T|C, 3593_T|C, 3731_C|T, 3767_A|G, 3788_G|A, 3879_T|A, 3911_A|G, 4175_C|T, 4709_T|C, 5315_A|G, 5879_T|C, 5937_T|C, 6053_T|A, 6629_T|A, 6671_T|C,
6983_A|G, 7073_C|T, 7094_T|C, 7451_A|C, 7633_T|C, 7678_C|T, 7805_T|C, 8225_A|G, 8594_C|T, 8702_C|T, 9137_T|C, 9296_C|T, 9305_C|T, 9353_T|C, 9365_A|T, 9854_C|T, 10561_T|C
Case 4 (A.1): PP470595.1
| Target: 995 samples | Number of changes: 39 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 5-6, 34-35 | BC BR coord: 901 - 902, 7516 - 7517 |
| Direction L1: >> | Initial region span: 1-5,6-7,37-39 | Gap history (edge excluded): 5-37 -> 7-37 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.98e-22 | |
| Rec. model vs L1: 3.45e-38 | Rec. model vs L2: 7.34e-07 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
5 |
9.392444 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.410036 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
6 |
-0.113981 |
-53.319458 |
234.638916 |
1.977576e-22 |
|
* |
|
| A.1.NmC1 |
0 |
6 |
-10.000000 |
-157.438820 |
442.877639 |
1.195066e-67 |
|
* |
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
37 |
2.251673 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1394_A|C, 1398_C|T, 1616_C|T, 2006_T|C, 2279_T|C, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A,
3218_T|A, 3279_A|G, 3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3902_C|T, 3989_T|C, 4448_T|C, 4709_T|C, 5937_T|C, 6008_C|T, 6983_A|G, 7196_G|A, 7451_A|C, 7633_T|C, 7805_T|C, 9305_C|T, 9353_T|C,
10164_A|G
Case 4 (A.1): PP626401.1
| Target: 995 samples | Number of changes: 163 | |
| BC: A.1 + A.1 | BC BR: 28-29 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-6,98-163 | Gap history (edge excluded): 6-98 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.78e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.914843 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
98 |
2.393317 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 47_C|T, 254_A|G, 423_G|A, 428_T|C, 467_T|C, 476_G|A, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 974_C|T, 1046_T|C, 1175_A|G, 1328_T|C, 1391_G|A, 1520_G|A, 1526_T|C,
1592_T|C, 1616_C|T, 1718_C|T, 1748_T|C, 1763_A|G, 1875_T|C, 1896_T|C, 1922_C|T, 2057_C|T, 2066_C|T, 2148_G|A, 2375_C|T, 2411_C|T, 2436_A|G, 2471_A|G, 2519_G|A, 2522_G|A, 2525_G|A, 2567_A|G,
2576_G|A, 2606_C|T, 2648_T|G, 2681_G|A, 2724_T|C, 2846_G|A, 2925_G|A, 2951_T|C, 2969_C|T, 3008_A|G, 3014_T|C, 3038_T|C, 3059_G|A, 3089_C|T, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A,
3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A, 3534_G|A, 3665_G|A, 3731_C|T, 3869_CT|TC, 3885_T|C, 3977_T|C, 3989_T|C, 3992_C|T, 4010_G|A, 4031_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4244_A|G, 4295_A|G,
4403_A|G, 4445_C|T, 4454_G|T, 4493_C|T, 4523_G|A, 4562_C|T, 4595_C|T, 4733_T|C, 4943_G|A, 4961_T|C, 5000_T|C, 5003_C|T, 5060_T|C, 5210_G|A, 5369_C|T, 5375_A|G, 5387_C|T, 5546_T|C, 5591_T|C,
5744_A|G, 5828_T|C, 5867_T|C, 5937_T|C, 6101_T|C, 6119_C|T, 6155_A|G, 6164_C|T, 6230_A|G, 6233_T|C, 6275_A|T, 6278_C|T, 6473_T|A, 6645_C|T, 6684_A|C, 6807_T|C, 6851_C|T, 6890_A|G, 6911_C|T,
6935_G|A, 6938_A|G, 6983_A|G, 7037_C|T, 7043_T|C, 7049_CT|TC, 7079_A|G, 7151_T|C, 7358_T|C, 7451_A|C, 7517_C|T, 7633_T|C, 7805_T|C, 7811_G|A, 7886_C|T, 7964_A|G, 8007_G|A, 8105_C|T, 8408_T|C,
8516_A|G, 8606_C|T, 8787_G|A, 8852_T|C, 9017_T|C, 9110_G|A, 9206_A|G, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9557_T|C, 9671_T|A, 9797_T|C, 9881_C|T, 9935_A|G, 10052_T|C,
10127_T|C, 10165_C|T, 10275_A|C, 10361_T|C, 10376_G|A, 10392_A|G, 10477_T|C, 10513_C|T, 10561_T|C, 10613_C|T
Case 4 (A.1): MT636065.1
| Target: 995 samples | Number of changes: 47 | |
| BC: A.1 + A.1.NmC1 | BC BR: 44-45 | BC BR coord: 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-31,45-47 | Gap history (edge excluded): 31-45 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.21e+00 | Rec. model vs L2: 4.30e-183 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
31 |
2.574448 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
45 |
1.972602 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 467_T|C, 737_A|T, 1263_T|C, 1547_T|C, 1616_C|T, 1931_G|T, 2178_C|T, 2375_C|T, 2474_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3260_A|G, 3279_A|G,
3332_G|A, 3534_G|A, 3712_A|G, 3731_C|T, 3918_C|T, 4152_C|T, 4287_G|A, 4607_A|G, 4757_T|C, 5937_T|C, 6353_G|A, 6596_G|A, 6734_C|T, 6983_A|G, 7211_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8186_A|G,
8714_G|A, 8879_T|G, 9305_C|T, 9353_T|C, 9383_C|T, 9581_G|A, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): KY317937.1
| Target: 995 samples | Number of changes: 41 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 21-22, 38-39 | BC BR coord: 3898 - 3899, 9304 - 9305 |
| Direction L1: >> | Initial region span: 1-21,31-38,39-41 | Gap history (edge excluded): 21-39 -> 21-31 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.47e-36 | |
| Rec. model vs L1: 6.62e-56 | Rec. model vs L2: 4.06e-12 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
21 |
17.0895 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
31 |
1.060445 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
39 |
0.000000 |
-132.580922 |
353.161843 |
2.304665e-58 |
|
|
|
| A.1.NmC2 |
0 |
39 |
-1.529105 |
-82.378496 |
252.756993 |
1.459455e-36 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
39 |
2.251673 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3459_C|T,
3534_G|A, 3731_C|T, 3902_C|T, 3989_T|C, 4448_T|C, 4886_G|A, 5240_C|T, 5540_G|A, 5937_T|C, 6008_C|T, 6983_A|G, 7208_A|G, 7451_A|C, 7633_T|C, 7712_C|T, 7787_C|T, 7805_T|C, 8555_C|T, 8832_C|T,
9305_C|T, 9353_T|C, 10164_A|G
Case 4 (A.1): PQ129534.1
| Target: 995 samples | Number of changes: 43 | |
| BC: A.1 + A.1 | BC BR: 5-6 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-4,10-43 | Gap history (edge excluded): 4-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.89e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.452528 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
3.910219 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 637_T|C, 968_G|A, 1115_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A,
3731_C|T, 3863_G|A, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7223_A|G, 7307_T|C, 7451_A|C, 7633_T|C, 7667_T|C, 7805_T|C,
8480_A|G, 9240_C|T, 9246_C|T, 9305_C|T, 9353_T|C
Case 4 (A.1): OK054444.1
| Target: 995 samples | Number of changes: 51 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-6,9-51 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.760176 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
5.200961 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6350_G|A, 6725_T|C, 6737_C|T, 6755_C|T,
6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): KY272991.1
| Target: 995 samples | Number of changes: 39 | |
| BC: A.1 + A.1 | BC BR: 27-28 | BC BR coord: 6505 - 6506 |
| Direction L1: >> | Initial region span: 1-27,33-39 | Gap history (edge excluded): 27-33 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.44e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
27 |
0.947804 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
33 |
0.504092 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1139_G|A, 1400_G|A, 1616_C|T, 2375_C|T, 2624_A|T, 2681_G|A, 2724_T|C, 2773_A|G, 2879_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3344_C|T, 3534_G|A, 3731_C|T,
3936_G|A, 4397_C|T, 4784_G|A, 4883_C|T, 5315_A|G, 5937_T|C, 6223_A|G, 6437_A|G, 6983_A|G, 7304_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 7877_C|T, 9305_C|T, 9353_T|C, 9533_T|C, 9905_G|A, 10561_T|C,
10694_A|G
Case 4 (A.1): MF801385.1
| Target: 995 samples | Number of changes: 40 | |
| BC: A.1 + A.1 | BC BR: 7-8 | BC BR coord: 2731 - 2732 |
| Direction L1: << | Initial region span: 1-4,8-40 | Gap history (edge excluded): 4-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.36e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.274353 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
4.353871 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 1616_C|T, 1904_C|T, 2375_C|T, 2555_T|C, 2654_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3996_A|T,
4440_C|T, 4697_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5588_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6725_T|C, 6737_C|T, 6755_C|T, 7451_A|C, 8454_A|T, 8872_A|G, 9240_C|T, 9305_C|T, 9353_T|C, 9767_T|A,
10561_T|C, 10696_A|G
Case 4 (A.1): KY559027.1
| Target: 995 samples | Number of changes: 34 | |
| BC: A.1 + A.1 | BC BR: 4-5 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-3,27-34 | Gap history (edge excluded): 3-27 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
3 |
0.18835 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
27 |
0.858819 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1616_C|T, 2222_G|A, 2375_C|T, 2442_T|C, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3002_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3731_C|T, 3945_T|C, 3989_T|C,
4874_C|T, 5267_T|C, 5937_T|C, 6716_A|G, 6983_A|G, 7058_T|C, 7451_A|C, 7505_C|T, 7633_T|C, 7805_T|C, 8057_G|A, 9305_C|T, 9353_T|C, 10052_T|C, 10253_T|C
Case 4 (A.1): KX013000.1
| Target: 995 samples | Number of changes: 54 | |
| BC: A.1 + A.1 | BC BR: 48-49 | BC BR coord: 9439 - 9440 |
| Direction L1: >> | Initial region span: 1-37,49-54 | Gap history (edge excluded): 37-49 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.95e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
37 |
1.883755 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
49 |
0.088061 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 266_T|C, 433_G|A, 806_C|T, 1175_A|G, 1616_C|T, 2049_T|C, 2093_T|C, 2233_A|G, 2375_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3338_T|C, 3395_T|A, 3460_G|A, 3518_C|T, 3534_G|A, 3731_C|T, 4445_C|T, 4619_T|A, 4688_A|G, 4757_T|C, 5303_T|C, 5693_T|C, 5937_T|C, 6422_T|C, 6492_C|T, 6983_A|G, 7043_T|C, 7247_G|A, 7451_A|C,
7517_C|T, 7633_T|C, 7805_T|C, 8007_G|A, 8162_C|T, 8408_T|C, 8765_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9538_A|G, 9612_T|C, 9676_A|G, 9785_A|G, 10392_A|G, 10561_T|C
Case 4 (A.1): KX117076.1
| Target: 995 samples | Number of changes: 53 | |
| BC: A.1 + A.1 | BC BR: 47-48 | BC BR coord: 9439 - 9440 |
| Direction L1: >> | Initial region span: 1-36,48-53 | Gap history (edge excluded): 36-48 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.95e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
36 |
1.802575 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
48 |
0.088061 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 8_9, 254_A|G, 266_T|C, 433_G|A, 806_C|T, 1175_A|G, 1616_C|T, 2049_T|C, 2093_T|C, 2233_A|G, 2375_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3338_T|C, 3460_G|A, 3518_C|T, 3534_G|A, 3731_C|T, 4445_C|T, 4619_T|A, 4757_T|C, 5303_T|C, 5693_T|C, 5937_T|C, 6422_T|C, 6492_C|T, 6983_A|G, 7043_T|C, 7247_G|A, 7451_A|C, 7517_C|T,
7633_T|C, 7805_T|C, 8007_G|A, 8162_C|T, 8408_T|C, 8765_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9538_A|G, 9612_T|C, 9676_A|G, 9785_A|G, 10392_A|G, 10561_T|C
Case 4 (A.1): KU922923.1
| Target: 995 samples | Number of changes: 44 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 9-10, 40-41 | BC BR coord: 1990 - 1991, 9304 - 9305 |
| Direction L1: >> | Initial region span: 1-5,34-40,41-44 | Gap history (edge excluded): 5-41 -> 5-34 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.21e-37 | |
| Rec. model vs L1: 2.43e-57 | Rec. model vs L2: 1.44e-03 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
5 |
9.392444 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
34 |
0.736746 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
41 |
0.000000 |
-170.678084 |
479.356168 |
3.980060e-74 |
|
|
|
| A.1.NmC2 |
0 |
41 |
-1.529105 |
-87.040820 |
312.081640 |
8.400015e-38 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
41 |
2.741564 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 967_C|T, 1398_C|T, 1616_C|T, 2006_T|C, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3170_G|A, 3186_G|A,
3218_T|A, 3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3784_T|C, 3902_C|T, 3989_T|C, 4268_C|T, 4448_T|C, 4930_C|A, 5937_T|C, 6008_C|T, 6983_A|G, 7196_G|A, 7451_A|C, 7633_T|C, 7805_T|C, 8534_C|A,
9196_G|T, 9209_A|G, 9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C
Case 4 (A.1): KU922960.1
| Target: 995 samples | Number of changes: 43 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 8-9, 39-40 | BC BR coord: 1990 - 1991, 9304 - 9305 |
| Direction L1: >> | Initial region span: 1-8,33-39,40-43 | Gap history (edge excluded): 8-40 -> 8-33 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.27e-37 | |
| Rec. model vs L1: 2.43e-57 | Rec. model vs L2: 2.94e-09 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
8 |
11.751824 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
33 |
0.736746 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
40 |
0.000000 |
-170.678084 |
479.356168 |
3.980060e-74 |
|
|
|
| A.1.NmC2 |
0 |
40 |
-1.529105 |
-87.040820 |
312.081640 |
8.400015e-38 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
40 |
2.741564 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 2006_T|C, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3170_G|A, 3186_G|A, 3218_T|A,
3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3784_T|C, 3902_C|T, 3989_T|C, 4268_C|T, 4448_T|C, 4930_C|A, 5937_T|C, 6008_C|T, 6983_A|G, 7196_G|A, 7451_A|C, 7633_T|C, 7805_T|C, 8534_C|A, 9196_G|T,
9209_A|G, 9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C
Case 4 (A.1): KU955590.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 42-43, 45-46 | BC BR coord: 9295 - 9296, 9433 - 9434 |
| Direction L1: >> | Initial region span: 1-42,43-45,47-49 | Gap history (edge excluded): 42-47 -> 45-47 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.68e-01 | |
| Rec. model vs L1: 4.70e-01 | Rec. model vs L2: 7.77e-184 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
42 |
4.328234 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
45 |
1.603743 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
43 |
-0.127338 |
-0.154713 |
6.309426 |
0.172045 |
* |
|
|
| A.1.NmC1 |
0 |
45 |
-9.888850 |
-9.888850 |
25.777699 |
0.000010 |
* |
* |
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
47 |
0.372598 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 767_C|T, 1040_T|C, 1475_G|A, 1616_C|T, 1658_T|A, 1814_T|A, 1904_C|T, 2375_C|T, 2549_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A,
3566_T|C, 3731_C|T, 3960_A|G, 3999_T|C, 4001_G|A, 5315_A|G, 5435_C|T, 5480_C|T, 5937_T|C, 6071_C|T, 6599_G|A, 6671_T|C, 6878_C|T, 6983_A|G, 7094_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 7868_G|T,
8207_T|C, 8467_T|C, 9107_A|G, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9809_C|T, 10094_A|G, 10319_C|T, 10561_T|C
Case 4 (A.1): MF167360.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 43-44, 46-47 | BC BR coord: 9295 - 9296, 9433 - 9434 |
| Direction L1: >> | Initial region span: 1-43,44-46,48-50 | Gap history (edge excluded): 43-48 -> 46-48 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.68e-01 | |
| Rec. model vs L1: 4.70e-01 | Rec. model vs L2: 3.25e-191 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
43 |
4.543362 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
46 |
1.603743 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
44 |
-0.127338 |
-0.154713 |
6.309426 |
0.172045 |
* |
|
|
| A.1.NmC1 |
0 |
46 |
-9.888850 |
-9.888850 |
25.777699 |
0.000010 |
* |
* |
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
48 |
0.372598 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 767_C|T, 1040_T|C, 1475_G|A, 1616_C|T, 1658_T|A, 1814_T|A, 1904_C|T, 2343_T|C, 2375_C|T, 2549_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3566_T|C, 3731_C|T, 3960_A|G, 3999_T|C, 4001_G|A, 5315_A|G, 5435_C|T, 5480_C|T, 5937_T|C, 6071_C|T, 6599_G|A, 6671_T|C, 6878_C|T, 6983_A|G, 7094_T|C, 7451_A|C, 7633_T|C, 7805_T|C,
7868_G|T, 8207_T|C, 8467_T|C, 9107_A|G, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9809_C|T, 10094_A|G, 10319_C|T, 10561_T|C
Case 4 (A.1): KY379148.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1.NmC2 + A.1 | BC BR: 43-44, 46-47 | BC BR coord: 9295 - 9296, 9433 - 9434 |
| Direction L1: >> | Initial region span: 1-43,44-46,48-50 | Gap history (edge excluded): 43-48 -> 46-48 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.68e-01 | |
| Rec. model vs L1: 4.70e-01 | Rec. model vs L2: 1.24e-191 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
43 |
4.563565 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
46 |
1.603743 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
44 |
-0.127338 |
-0.154713 |
6.309426 |
0.172045 |
* |
|
|
| A.1.NmC1 |
0 |
46 |
-9.888850 |
-9.888850 |
25.777699 |
0.000010 |
* |
* |
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
48 |
0.372598 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 767_C|T, 1040_T|C, 1475_G|A, 1616_C|T, 1658_T|A, 1814_T|A, 1904_C|T, 2375_C|T, 2549_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A,
3566_T|C, 3593_T|C, 3731_C|T, 3960_A|G, 3999_T|C, 4001_G|A, 5315_A|G, 5435_C|T, 5480_C|T, 5937_T|C, 6071_C|T, 6599_G|A, 6671_T|C, 6878_C|T, 6983_A|G, 7094_T|C, 7451_A|C, 7633_T|C, 7805_T|C,
7868_G|T, 8207_T|C, 8467_T|C, 9107_A|G, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9809_C|T, 10094_A|G, 10319_C|T, 10561_T|C
Case 4 (A.1): PP431236.1
| Target: 995 samples | Number of changes: 29 | |
| BC: A.1 + A.1.NmC2 | BC BR: 25-26 | BC BR coord: 9016 - 9017 |
| Direction L1: << | Initial region span: 1-25,26-29 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.63e-01 | Rec. model vs L2: 4.77e-65 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
25 |
1.359142 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
26 |
2.741564 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
3 |
0.157890 |
-1.248231 |
12.496462 |
0.085435 |
* |
|
|
|
Target sequence
, 254_A|G, 1616_C|T, 1875_T|C, 2375_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 2948_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3731_C|T, 3797_A|G, 4988_G|T, 5768_G|A, 5937_T|C, 6470_G|C,
6890_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8570_T|C, 8867_C|T, 9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C
Case 4 (A.1): KY120352.1
| Target: 995 samples | Number of changes: 34 | |
| BC: A.1 + A.1 | BC BR: 18-19 | BC BR coord: 4999 - 5000 |
| Direction L1: << | Initial region span: 1-7,24-34 | Gap history (edge excluded): 7-24 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.72e-19 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.499275 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
24 |
1.386952 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1167_T|A, 1616_C|T, 2681_G|A, 2717_C|T, 2724_T|C, 2768_A|G, 2925_G|A, 3059_G|A, 3137_TC|CT, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3497_G|A, 3731_C|T, 3911_A|G, 4757_T|C,
5387_C|T, 5420_T|C, 5937_T|C, 7451_A|C, 7511_C|T, 7514_A|C, 7633_T|C, 7805_T|C, 8045_T|C, 8207_T|C, 8250_C|T, 9244_T|C, 9305_C|T, 9353_T|C, 9553_A|G, 9908_A|G
Case 4 (A.1): KY553111.1
| Target: 995 samples | Number of changes: 243 | |
| BC: A.1 + A.1 | BC BR: 18-19 | BC BR coord: 754 - 755 |
| Direction L1: << | Initial region span: 1-9,32-243 | Gap history (edge excluded): 9-32 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.98e-14 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
0.055838 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
32 |
13.880017 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 227_T|C, 254_A|G, 257_T|A, 428_T|C, 434_T|C, 446_T|C, 455_G|C, 467_T|C, 475_C|T, 523_A|G, 558_T|C, 578_T|C, 584_G|A, 614_C|T, 639_C|T, 653_G|A, 689_G|A, 719_T|C, 803_A|G, 806_C|T, 837_T|C,
851_A|G, 872_T|C, 917_C|T, 941_C|T, 1043_T|C, 1070_C|T, 1175_A|G, 1214_A|G, 1232_A|G, 1304_C|A, 1433_1438, 1440_1445, 1587_T|C, 1592_T|C, 1616_C|T, 1655_C|T, 1670_C|T, 1682_C|T, 1871_T|C,
1904_C|T, 1910_G|A, 2021_C|T, 2066_C|T, 2084_T|C, 2141_C|T, 2375_C|T, 2394_A|G, 2411_C|T, 2435_T|C, 2437_TG|CA, 2447_C|T, 2525_G|A, 2606_C|T, 2613_T|C, 2625_G|A, 2648_T|G, 2669_T|C, 2681_G|A,
2714_C|T, 2724_T|C, 2768_A|G, 2846_G|A, 2925_G|A, 3038_T|C, 3053_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3275_C|T, 3332_G|A, 3347_C|T, 3362_T|C,
3365_A|G, 3380_T|C, 3434_G|A, 3534_G|A, 3545_A|G, 3701_T|C, 3721_TT|CC, 3731_C|T, 3794_C|T, 3797_A|G, 3806_A|T, 3854_A|G, 3885_T|C, 3905_C|T, 3938_T|C, 3989_T|C, 4031_C|T, 4070_T|A, 4085_T|C,
4128_T|C, 4146_C|T, 4238_C|T, 4271_A|G, 4277_T|C, 4295_A|G, 4422_G|A, 4439_C|T, 4454_G|A, 4472_T|C, 4481_G|A, 4493_C|T, 4502_C|T, 4523_G|A, 4544_T|C, 4592_A|G, 4595_C|T, 4607_A|G, 4706_A|T,
4733_T|C, 4751_T|C, 4838_T|C, 4859_A|G, 4871_T|C, 4988_G|A, 5000_T|C, 5024_T|C, 5060_T|C, 5066_C|T, 5193_T|C, 5279_A|G, 5336_G|T, 5369_C|T, 5375_A|G, 5387_C|T, 5429_G|A, 5450_T|C, 5492_A|C,
5591_T|C, 5612_T|C, 5717_C|T, 5744_A|G, 5807_A|G, 5811_C|A, 5828_T|C, 5846_T|C, 5888_T|C, 5901_C|T, 5937_T|C, 5975_C|T, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6239_T|G, 6246_C|T, 6310_C|T,
6362_AC|GT, 6431_G|A, 6443_G|A, 6458_G|A, 6473_T|C, 6593_C|T, 6684_A|C, 6698_A|G, 6746_C|T, 6797_T|C, 6890_A|G, 6983_A|G, 7025_C|T, 7037_C|T, 7049_CT|TC, 7085_A|G, 7139_A|G, 7157_C|T,
7202_A|G, 7208_A|G, 7313_T|G, 7427_A|G, 7451_A|C, 7517_C|T, 7529_T|C, 7568_T|C, 7586_T|C, 7633_T|C, 7646_C|T, 7679_A|G, 7713_T|C, 7805_T|C, 7817_G|A, 7853_G|T, 7869_C|A, 7871_G|A, 7883_G|A,
7899_A|G, 7913_T|C, 7937_C|T, 7961_A|G, 7994_T|C, 8006_CG|TA, 8093_G|T, 8291_A|G, 8408_T|C, 8504_T|C, 8516_A|G, 8606_C|T, 8732_T|C, 8813_G|A, 8832_C|A, 9011_C|T, 9017_T|C, 9119_T|C, 9176_C|T,
9206_A|G, 9212_A|G, 9272_C|T, 9305_C|T, 9353_T|C, 9407_G|A, 9434_A|G, 9455_G|A, 9503_C|T, 9509_T|C, 9518_A|G, 9527_A|G, 9591_T|C, 9596_G|A, 9677_G|A, 9731_A|G, 9818_G|A, 9884_G|A, 9893_C|A,
9896_T|A, 9899_A|G, 10001_C|T, 10133_G|A, 10166_G|A, 10244_C|T, 10262_T|C, 10268_C|T, 10281_G|A, 10334_A|G, 10361_T|C, 10392_A|G, 10561_T|C, 10566_T|A
Case 4 (A.1): PP431225.1
| Target: 995 samples | Number of changes: 18 | |
| BC: A.1.NmC2 + A.1 | BC BR: 12-13 | BC BR coord: 2731 - 2732 |
| Direction L1: >> | Initial region span: 1-7,14-18 | Gap history (edge excluded): 7-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.87e-15 | Rec. model vs L2: 9.63e-02 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
7 |
11.865805 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
14 |
0.357799 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 1398_C|T, 1616_C|T, 1922_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3026_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A
Case 4 (A.1): MW915411.1
| Target: 995 samples | Number of changes: 93 | |
| BC: A.1 + A.1.NmC1 | BC BR: 90-91 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-4,91-93 | Gap history (edge excluded): 4-91 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.81e+00 | Rec. model vs L2: 3.55e-289 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.670399 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
91 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 19_A|G, 233_G|A, 254_A|G, 512_C|T, 523_A|G, 558_T|C, 579_A|G, 653_G|A, 716_C|T, 902_T|C, 1145_A|G, 1175_A|G, 1358_G|A, 1515_C|T, 1538_A|G, 1568_C|T, 1616_C|T, 1748_T|C, 1760_A|G, 2375_C|T,
2648_T|C, 2654_C|T, 2681_G|A, 2724_T|C, 2894_G|T, 2925_G|A, 2936_A|G, 3035_C|T, 3059_G|A, 3134_C|T, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3248_T|C, 3254_T|C, 3311_A|G, 3332_G|A, 3455_G|A,
3482_T|C, 3518_C|T, 3534_G|A, 3731_C|T, 3902_C|T, 4085_T|C, 4454_G|A, 4472_T|C, 4499_C|A, 5000_T|C, 5060_T|C, 5375_A|G, 5516_T|C, 5564_C|T, 5828_T|C, 5937_T|C, 5975_C|T, 6056_C|T, 6140_A|G,
6254_T|C, 6269_C|T, 6308_C|T, 6363_C|T, 6629_T|C, 6698_A|G, 6731_G|A, 6917_T|C, 6981_G|A, 6983_A|G, 6996_T|C, 7014_C|T, 7271_C|T, 7293_C|T, 7451_A|C, 7633_T|C, 7805_T|C, 8007_G|A, 8045_T|C,
8408_T|C, 8414_G|A, 8477_T|A, 9017_T|C, 9305_C|T, 9344_G|A, 9353_T|C, 9434_A|G, 9569_A|G, 9596_G|A, 9757_A|G, 9866_A|G, 10223_C|T, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): PP431239.1
| Target: 995 samples | Number of changes: 36 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 5-6, 25-26 | BC BR coord: 1174 - 1175, 5936 - 5937 |
| Direction L1: >> | Initial region span: 1-5,22-25,26-36 | Gap history (edge excluded): 5-26 -> 5-22 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.84e-24 | |
| Rec. model vs L1: 7.75e-38 | Rec. model vs L2: 4.29e-10 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
5 |
9.392444 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
22 |
0.778802 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
26 |
0.000000 |
-54.652550 |
211.305099 |
2.820861e-24 |
|
|
|
| A.1.NmC1 |
0 |
26 |
-1.741599 |
-93.942486 |
289.884973 |
2.449757e-41 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
26 |
6.356741 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 1616_C|T, 2057_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3731_C|T,
3902_C|T, 3989_T|C, 4571_T|C, 4988_G|T, 5072_G|A, 5549_C|T, 5937_T|C, 6008_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9305_C|T, 9353_T|C, 10164_A|G, 10410_G|A, 10561_T|C
Case 4 (A.1): MT439642.1
| Target: 995 samples | Number of changes: 45 | |
| BC: A.1 + A.1 | BC BR: 30-31 | BC BR coord: 6007 - 6008 |
| Direction L1: >> | Initial region span: 1-29,38-45 | Gap history (edge excluded): 29-38 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.29e-10 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
29 |
3.305789 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
38 |
1.094003 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80, 116_C|A, 138, 254_A|G, 737_A|T, 1434_1445, 1616_C|T, 2375_C|T, 2511_T|A, 2681_G|A, 2724_T|C, 3059_G|A, 3113_C|T, 3140_A|G, 3170_G|A, 3186_G|A, 3218_T|A, 3332_G|A, 3731_C|T, 4152_C|T,
4184_C|T, 4271_A|G, 4287_G|A, 4318_T|C, 4530_C|T, 4625_A|G, 4658_G|A, 4682_C|T, 5718_G|A, 5937_T|C, 6104_T|C, 6353_G|A, 6983_A|G, 7340_C|T, 7451_A|C, 7633_T|C, 7805_T|C, 8714_G|A, 8783_T|C,
9305_C|T, 9353_T|C, 10265_A|G, 10500_G|A, 10539_G|A, 10561_T|C
Case 4 (A.1): PP431229.1
| Target: 995 samples | Number of changes: 39 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 3-4, 33-34 | BC BR coord: 652 - 653, 7651 - 7652 |
| Direction L1: << | Initial region span: 1-3,4-5,35-39 | Gap history (edge excluded): 3-35 -> 5-35 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.95e-12 | |
| Rec. model vs L1: 1.48e-23 | Rec. model vs L2: 2.94e-03 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
3 |
2.657647 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.470661 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
4 |
0.000000 |
-33.869168 |
205.738336 |
1.936769e-12 |
|
* |
|
| A.1.NmC1 |
0 |
4 |
-1.588178 |
-171.846304 |
481.692608 |
2.318978e-72 |
|
* |
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
35 |
3.669037 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 575_T|C, 727_A|G, 736_C|T, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A,
3218_T|A, 3332_G|A, 3459_C|T, 3534_G|A, 3557_T|C, 3731_C|T, 3989_T|C, 5450_T|C, 5937_T|C, 6008_C|T, 6983_A|G, 7451_A|C, 7568_T|C, 7633_T|C, 7805_T|C, 9305_C|T, 9353_T|C, 10164_A|G, 10378_A|G,
10561_T|C
Case 4 (A.1): KY559009.1
| Target: 995 samples | Number of changes: 36 | |
| BC: A.1 + A.1 | BC BR: 6-7 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-4,20-36 | Gap history (edge excluded): 4-20 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.52e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.686929 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
20 |
1.960004 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1364_C|T, 1511_C|T, 1587_T|C, 1616_C|T, 1838_C|T, 2375_C|T, 2648_T|C, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3731_C|T, 3771_C|T,
4152_C|T, 4287_G|A, 5937_T|C, 6269_C|T, 6353_G|A, 6804_C|T, 6983_A|G, 7268_G|A, 7451_A|C, 7633_T|C, 7805_T|C, 8714_G|A, 8991_C|T, 9020_T|C, 9305_C|T, 9353_T|C, 10367_T|C
Case 4 (A.1): LC191864.1
| Target: 995 samples | Number of changes: 69 | |
| BC: A.1 + A.1 | BC BR: 48-49 | BC BR coord: 7049 - 7050 |
| Direction L1: >> | Initial region span: 1-48,58-69 | Gap history (edge excluded): 48-58 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.16e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
48 |
3.611924 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
58 |
0.173495 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 19_A|G, 254_A|G, 433_G|A, 685_C|T, 1175_A|G, 1322_A|C, 1616_C|T, 1772_T|C, 2066_C|T, 2189_C|T, 2375_C|T, 2420_T|C, 2555_T|C, 2603_C|T, 2609_T|C, 2613_T|C, 2654_C|T, 2681_G|A, 2702_A|G,
2724_T|C, 2925_G|A, 2930_T|C, 3002_T|C, 3030_C|T, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3338_T|C, 3518_C|T, 3534_G|A, 3731_C|T, 3776_G|T, 3851_T|C, 4688_A|G, 5003_C|T, 5363_C|T,
5519_A|G, 5612_T|C, 5937_T|C, 6038_T|C, 6422_T|C, 6492_C|T, 6860_C|T, 6983_A|G, 7007_C|T, 7043_T|C, 7451_A|C, 7517_C|T, 7547_G|T, 7633_T|C, 7805_T|C, 8007_G|A, 8123_T|C, 8408_T|C, 8528_T|C,
8887_A|G, 8895_T|C, 9305_C|T, 9353_T|C, 9359_C|T, 9392_A|T, 9404_A|G, 9434_A|G, 9538_A|G, 10370_A|G, 10392_A|G, 10561_T|C
Case 4 (A.1): OL423654.1
| Target: 995 samples | Number of changes: 35 | |
| BC: A.1 + A.1 | BC BR: 25-26 | BC BR coord: 7516 - 7517 |
| Direction L1: >> | Initial region span: 1-23,28-35 | Gap history (edge excluded): 23-28 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.57e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
23 |
2.169111 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
28 |
0.487976 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1616_C|T, 2681_G|A, 2717_C|T, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3431_G|A, 3712_A|G, 3731_C|T, 3999_T|G, 4172_C|T, 4390_C|T, 5315_A|G, 5460_A|C,
5691_G|A, 5937_T|C, 6311_G|A, 7046_T|C, 7050_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8045_T|C, 8075_G|A, 8534_C|T, 8774_A|G, 8945_T|C, 9305_C|T, 9344_G|A, 9353_T|C
Case 4 (A.1): MT377498.1
| Target: 995 samples | Number of changes: 161 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 5-6, 9-10 | BC BR coord: 522 - 523, 754 - 755 |
| Direction L1: << | Initial region span: 1-5,6-8,96-161 | Gap history (edge excluded): 5-96 -> 8-96 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.78e-02 | |
| Rec. model vs L1: 1.39e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.679513 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
8 |
4.667316 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
77 |
-0.641906 |
-2.560621 |
13.121243 |
5.117957e-03 |
* |
|
|
| A.1.NmC2 |
0 |
6 |
-10.000000 |
-40.000000 |
88.000000 |
2.812621e-19 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
96 |
2.393317 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 423_G|A, 428_T|C, 467_T|C, 476_G|A, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 974_C|T, 1046_T|C, 1175_A|G, 1328_T|C, 1391_G|A, 1520_G|A, 1526_T|C, 1592_T|C,
1616_C|T, 1718_C|T, 1748_T|C, 1763_A|G, 1875_T|C, 1896_T|C, 1922_C|T, 2057_C|T, 2066_C|T, 2148_G|A, 2375_C|T, 2411_C|T, 2436_A|G, 2471_A|G, 2519_G|A, 2522_G|A, 2525_G|A, 2576_G|A, 2606_C|T,
2648_T|G, 2681_G|A, 2724_T|C, 2846_G|A, 2925_G|A, 2951_T|C, 2969_C|T, 3008_A|G, 3014_T|C, 3038_T|C, 3059_G|A, 3089_C|T, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C,
3266_C|T, 3332_G|A, 3534_G|A, 3665_G|A, 3731_C|T, 3869_CT|TC, 3885_T|C, 3977_T|C, 3989_T|C, 3992_C|T, 4010_G|A, 4031_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4244_A|G, 4295_A|G, 4403_A|G, 4445_C|T,
4454_G|T, 4493_C|T, 4523_G|A, 4562_C|T, 4595_C|T, 4733_T|C, 4943_G|A, 4961_T|C, 5000_T|C, 5003_C|T, 5060_T|C, 5210_G|A, 5369_C|T, 5375_A|G, 5387_C|T, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C,
5867_T|C, 5937_T|C, 6101_T|C, 6119_C|T, 6155_A|G, 6164_C|T, 6230_A|G, 6233_T|C, 6275_A|T, 6278_C|T, 6473_T|A, 6645_C|T, 6684_A|C, 6807_T|C, 6851_C|T, 6890_A|G, 6911_C|T, 6935_G|A, 6938_A|G,
6983_A|G, 7037_C|T, 7043_T|C, 7049_CT|TC, 7079_A|G, 7151_T|C, 7358_T|C, 7451_A|C, 7517_C|T, 7633_T|C, 7805_T|C, 7811_G|A, 7886_C|T, 7964_A|G, 8007_G|A, 8105_C|T, 8408_T|C, 8516_A|G, 8606_C|T,
8787_G|A, 8852_T|C, 9017_T|C, 9110_G|A, 9206_A|G, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9557_T|C, 9671_T|A, 9797_T|C, 9881_C|T, 9935_A|G, 10052_T|C, 10127_T|C,
10165_C|T, 10275_A|C, 10361_T|C, 10376_G|A, 10392_A|G, 10477_T|C, 10513_C|T, 10561_T|C, 10613_C|T
Case 4 (A.1): KY120353.1
| Target: 995 samples | Number of changes: 238 | |
| BC: A.1 + A.1 | BC BR: 31-32 | BC BR coord: 1397 - 1398 |
| Direction L1: << | Initial region span: 1-9,32-238 | Gap history (edge excluded): 9-32 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.97e-15 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
0.055838 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
32 |
13.982248 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 227_T|C, 254_A|G, 257_T|A, 428_T|C, 434_T|C, 446_T|C, 455_G|C, 467_T|C, 475_C|T, 523_A|G, 558_T|C, 578_T|C, 584_G|A, 614_C|T, 639_C|T, 653_G|A, 689_G|A, 719_T|C, 803_A|G, 806_C|T, 837_T|C,
851_A|G, 872_T|C, 917_C|T, 941_C|T, 1043_T|C, 1070_C|T, 1175_A|G, 1214_A|G, 1232_A|G, 1304_C|A, 1587_T|C, 1592_T|C, 1616_C|T, 1655_C|T, 1670_C|T, 1682_C|T, 1871_T|C, 1904_C|T, 1910_G|A,
2021_C|T, 2066_C|T, 2084_T|C, 2141_C|T, 2375_C|T, 2394_A|G, 2411_C|T, 2435_T|C, 2437_TG|CA, 2447_C|T, 2525_G|A, 2606_C|T, 2613_T|C, 2625_G|A, 2648_T|G, 2669_T|C, 2681_G|A, 2714_C|T, 2724_T|C,
2768_A|G, 2846_G|A, 2925_G|A, 3038_T|C, 3053_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3275_C|T, 3332_G|A, 3347_C|T, 3362_T|C, 3365_A|G, 3380_T|C,
3434_G|A, 3534_G|A, 3545_A|G, 3701_T|C, 3721_TT|CC, 3731_C|T, 3797_A|G, 3806_A|T, 3854_A|G, 3885_T|C, 3905_C|T, 3938_T|C, 3989_T|C, 4031_C|T, 4070_T|A, 4085_T|C, 4128_T|C, 4146_C|T, 4238_C|T,
4271_A|G, 4277_T|C, 4295_A|G, 4422_G|A, 4439_C|T, 4454_G|A, 4472_T|C, 4481_G|A, 4493_C|T, 4502_C|T, 4523_G|A, 4544_T|C, 4592_A|G, 4595_C|T, 4607_A|G, 4706_A|T, 4733_T|C, 4751_T|C, 4838_T|C,
4859_A|G, 4871_T|C, 4933_G|T, 4988_G|A, 5000_T|C, 5024_T|C, 5060_T|C, 5066_C|T, 5193_T|C, 5279_A|G, 5336_G|T, 5369_C|T, 5375_A|G, 5387_C|T, 5429_G|A, 5450_T|C, 5492_A|C, 5591_T|C, 5612_T|C,
5717_C|T, 5744_A|G, 5807_A|G, 5811_C|A, 5828_T|C, 5846_T|C, 5888_T|C, 5901_C|T, 5937_T|C, 5975_C|T, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6239_T|G, 6246_C|T, 6310_C|T, 6362_AC|GT, 6431_G|A,
6443_G|A, 6458_G|A, 6473_T|C, 6593_C|T, 6684_A|C, 6698_A|G, 6746_C|T, 6797_T|C, 6890_A|G, 6983_A|G, 7025_C|T, 7037_C|T, 7049_CT|TC, 7085_A|G, 7139_A|G, 7157_C|T, 7202_A|G, 7208_A|G, 7313_T|G,
7427_A|G, 7451_A|C, 7517_C|T, 7529_T|C, 7568_T|C, 7586_T|C, 7633_T|C, 7646_C|T, 7679_A|G, 7713_T|C, 7805_T|C, 7817_G|A, 7853_G|T, 7869_C|A, 7871_G|A, 7883_G|A, 7899_A|G, 7913_T|C, 7937_C|T,
7961_A|G, 7994_T|C, 8006_CG|TA, 8093_G|T, 8291_A|G, 8408_T|C, 8504_T|C, 8516_A|G, 8606_C|T, 8732_T|C, 8813_G|A, 8832_C|A, 9011_C|T, 9017_T|C, 9119_T|C, 9176_C|T, 9206_A|G, 9212_A|G, 9272_C|T,
9305_C|T, 9353_T|C, 9407_G|A, 9434_A|G, 9455_G|A, 9503_C|T, 9509_T|C, 9518_A|G, 9527_A|G, 9591_T|C, 9596_G|A, 9677_G|A, 9731_A|G, 9818_G|A, 9884_G|A, 9893_C|A, 9896_T|A, 9899_A|G, 10001_C|T,
10133_G|A, 10166_G|A, 10244_C|T, 10262_T|C, 10268_C|T, 10281_G|A, 10334_A|G, 10361_T|C
Case 4 (A.1): PP431246.1
| Target: 995 samples | Number of changes: 32 | |
| BC: A.1 + A.1.NmC2 | BC BR: 28-29 | BC BR coord: 9016 - 9017 |
| Direction L1: << | Initial region span: 1-28,29-32 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.63e-01 | Rec. model vs L2: 4.06e-91 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
28 |
2.094844 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
29 |
2.741564 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
2 |
0.865675 |
-1.248231 |
12.496462 |
0.085435 |
* |
|
|
|
Target sequence
, 254_A|G, 428_T|C, 1298_T|C, 1616_C|T, 1875_T|C, 2375_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3731_C|T, 4988_G|T, 5180_A|G, 5243_T|A, 5549_C|T,
5768_G|A, 5937_T|C, 6890_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8447_C|T, 8570_T|C, 8867_C|T, 9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C
Case 4 (A.1): KY785444.1
| Target: 995 samples | Number of changes: 18 | |
| BC: A.1 + A.1 | BC BR: 13-14 | BC BR coord: 7049 - 7050 |
| Direction L1: >> | Initial region span: 1-11,14-18 | Gap history (edge excluded): 11-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.23e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
1.832899 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
14 |
0.376929 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1052_G|A, 1616_C|T, 1736_A|G, 2375_C|T, 5195_G|A, 5297_C|T, 5315_A|G, 5408_C|T, 6725_T|C, 6737_C|T, 6977_G|T, 6983_A|G, 7226_A|G, 7633_T|C, 7805_T|C, 9353_T|C, 10178_C|T
Case 4 (A.1): OL423650.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 12-13 | BC BR coord: 3898 - 3899 |
| Direction L1: << | Initial region span: 1-11,14-49 | Gap history (edge excluded): 11-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.93e-10 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
0.865067 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
14 |
3.904957 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 78_T|A, 254_A|G, 1475_G|A, 1616_C|T, 1904_C|T, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3657_A|T, 3731_C|T, 3945_T|C, 4658_G|A, 5156_T|C, 5167_A|G, 5315_A|G, 5746_A|T, 5903_A|G,
5937_T|C, 6983_A|G, 7058_T|C, 7094_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8144_A|G, 9144_T|C, 9149_C|T, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9401_G|A, 10168_A|G, 10220_T|C, 10226_A|G,
10230_C|G, 10234_G|C, 10240_G|C, 10242_A|C, 10245_A|C, 10252_CTG|GAA, 10256_G|A, 10259_C|A, 10261_TT|AA, 10268_C|A, 10271_A|T, 10274_CAAC|GGTG
Case 4 (A.1): PP431247.1
| Target: 995 samples | Number of changes: 42 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 20-21, 37-38 | BC BR coord: 3517 - 3518, 9304 - 9305 |
| Direction L1: >> | Initial region span: 1-17,36-37,38-42 | Gap history (edge excluded): 17-38 -> 17-36 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.67e-27 | |
| Rec. model vs L1: 7.34e-40 | Rec. model vs L2: 2.45e-07 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
17 |
14.283815 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
36 |
0.448682 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
38 |
0.000000 |
-114.044124 |
318.088248 |
4.523358e-50 |
|
|
|
| A.1.NmC2 |
0 |
38 |
-1.529105 |
-62.078579 |
214.157158 |
1.673300e-27 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
38 |
4.767649 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3227_T|G, 3332_G|A,
3459_C|T, 3534_G|A, 3674_T|C, 3731_C|T, 3810_T|C, 3902_C|T, 3989_T|C, 4332_C|T, 4448_T|C, 4970_G|A, 5937_T|C, 6008_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8675_G|A, 8696_C|T, 9305_C|T,
9353_T|C, 10164_A|G, 10410_G|A, 10561_T|C
Case 4 (A.1): KY014315.2
| Target: 995 samples | Number of changes: 40 | |
| BC: A.1 + A.1 | BC BR: 27-28 | BC BR coord: 6007 - 6008 |
| Direction L1: << | Initial region span: 1-7,28-40 | Gap history (edge excluded): 7-28 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.35e-09 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.310254 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
28 |
0.571778 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 138_T|C, 254_A|G, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3070_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4016_T|A,
4733_T|C, 4784_G|A, 4905_T|C, 5195_G|A, 5228_T|C, 5315_A|G, 5405_C|T, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6962_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9240_C|T, 9305_C|T, 9353_T|C,
9533_T|C, 10163_T|C
Case 4 (A.1): PP431233.1
| Target: 995 samples | Number of changes: 41 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 3-4, 36-37 | BC BR coord: 652 - 653, 9304 - 9305 |
| Direction L1: << | Initial region span: 1-3,35-36,37-41 | Gap history (edge excluded): 3-37 -> 3-35 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.15e-18 | |
| Rec. model vs L1: 6.88e-36 | Rec. model vs L2: 6.46e-04 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
3 |
2.657647 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
35 |
0.203761 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
37 |
0.000000 |
-170.633219 |
497.266437 |
8.900671e-72 |
|
|
|
| A.1.NmC2 |
0 |
36 |
-1.418347 |
-46.519526 |
249.039052 |
7.110209e-18 |
|
* |
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
37 |
3.669037 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 575_T|C, 665_C|T, 755_T|C, 770_C|T, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 2375_C|T, 2435_T|C, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G,
3186_G|A, 3218_T|A, 3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3836_T|C, 3902_C|T, 3989_T|C, 4957_T|C, 5937_T|C, 6008_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7649_T|C, 7805_T|C, 9305_C|T, 9353_T|C,
10164_A|G, 10378_A|G, 10561_T|C
Case 4 (A.1): KY014314.2
| Target: 995 samples | Number of changes: 46 | |
| BC: A.1 + A.1 | BC BR: 19-20 | BC BR coord: 3253 - 3254 |
| Direction L1: << | Initial region span: 1-17,23-46 | Gap history (edge excluded): 17-23 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.54e-10 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
17 |
2.108104 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
23 |
3.561785 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 506_T|C, 1533_C|T, 1616_C|T, 1718_C|A, 1727_C|T, 2060_T|C, 2435_T|C, 2636_C|A, 2681_G|A, 2717_C|T, 2724_T|C, 2861_C|T, 2925_G|A, 3059_G|A, 3140_A|G, 3143_C|T, 3186_G|A, 3218_T|A,
3332_G|A, 3731_C|T, 3899_C|T, 3999_T|C, 5163_C|T, 5249_C|T, 5369_C|T, 5840_T|C, 5937_T|C, 6278_C|T, 6908_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8045_T|C, 8105_C|T, 8459_G|A, 8621_G|A, 8631_A|G,
8888_T|C, 9029_C|T, 9287_C|T, 9305_C|T, 9311_G|A, 9353_T|C, 10301_T|G, 10561_T|C
Case 4 (A.1): MH368551.1
| Target: 995 samples | Number of changes: 180 | |
| BC: A.1 + A.1.NmC1 | BC BR: 176-177 | BC BR coord: 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-176,177-180 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.96e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
176 |
3.997354 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
177 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 122_A|G, 254_A|G, 359_C|T, 423_G|A, 467_T|C, 475_C|T, 496_G|A, 523_A|G, 558_T|A, 653_G|A, 719_T|C, 798_T|C, 803_A|G, 837_T|C, 1070_C|T, 1175_A|G, 1337_A|T, 1343_C|T, 1442_C|T, 1616_C|T,
1655_C|T, 1736_A|G, 1922_C|T, 2066_C|T, 2093_T|C, 2111_T|G, 2156_G|A, 2282_A|G, 2285_C|T, 2298_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2570_C|T, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A,
2724_T|C, 2828_C|T, 2864_A|G, 2925_G|A, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3282_A|G, 3296_C|T, 3332_G|A,
3473_C|T, 3518_C|T, 3534_G|A, 3605_G|A, 3617_G|A, 3731_C|T, 3767_A|T, 3806_A|T, 3827_C|T, 3854_A|G, 3885_T|C, 3928_T|C, 3989_T|C, 4085_T|C, 4094_C|T, 4106_A|G, 4238_C|T, 4295_A|G, 4454_G|A,
4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5036_C|T, 5060_T|C, 5066_C|T, 5096_T|C, 5267_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T,
5591_T|C, 5717_C|T, 5828_T|C, 5937_T|C, 6002_T|C, 6056_C|T, 6065_T|C, 6092_C|T, 6101_T|C, 6164_C|T, 6363_C|T, 6443_G|A, 6473_T|C, 6512_C|T, 6533_A|G, 6584_T|C, 6608_G|A, 6626_C|T, 6629_T|C,
6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 6989_C|T, 7037_C|T, 7049_CT|TC, 7148_T|C, 7157_C|T, 7175_C|T, 7451_A|T, 7493_G|T, 7517_C|T, 7538_A|G, 7568_T|C, 7577_T|C, 7604_T|C, 7633_T|C, 7679_A|G,
7713_T|C, 7805_T|C, 7826_T|C, 7869_C|A, 7937_C|T, 8007_G|A, 8105_C|T, 8387_C|T, 8408_T|C, 8429_G|A, 8516_A|G, 8597_T|C, 8823_C|T, 8888_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9200_G|A, 9225_C|T,
9272_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9677_G|A, 9704_C|T, 9758_A|G, 9884_G|A, 9887_C|T, 9896_T|A, 9899_A|G, 10217_A|G, 10230_C|T, 10281_G|A,
10286_C|T, 10314_A|G, 10349_T|C, 10361_T|C, 10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): MW122393.1
| Target: 995 samples | Number of changes: 47 | |
| BC: A.1 + A.1 | BC BR: 38-39 | BC BR coord: 8311 - 8312 |
| Direction L1: >> | Initial region span: 1-38,43-47 | Gap history (edge excluded): 38-43 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.66e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
38 |
4.700514 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
43 |
0.315947 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 346_T|C, 779_T|C, 1187_G|T, 1475_G|A, 1499_A|G, 1616_C|T, 1715_G|A, 1904_C|T, 2375_C|T, 2925_G|A, 3059_G|A, 3140_A|G, 3153_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3566_T|C,
3593_T|C, 3700_G|A, 3731_C|T, 3797_A|G, 4883_C|T, 5087_T|C, 5156_T|C, 5937_T|C, 6536_C|T, 6563_G|A, 6629_T|A, 6671_T|C, 6983_A|G, 7094_T|C, 7151_T|C, 7451_A|C, 7505_C|T, 7633_T|C, 8237_T|C,
8594_C|T, 8852_T|C, 9017_T|C, 9203_A|G, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9488_C|T
Case 4 (A.1): KY693678.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1.NmC2 + A.1 | BC BR: 11-12 | BC BR coord: 2404 - 2405 |
| Direction L1: >> | Initial region span: 1-8,46-49 | Gap history (edge excluded): 8-46 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.28e-87 | Rec. model vs L2: 3.46e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
8 |
11.668796 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
46 |
0.669623 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1421_C|T, 1592_T|C, 1616_C|T, 2375_C|T, 2534_C|T, 2558_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A,
3218_T|A, 3332_G|A, 3338_T|C, 3459_C|T, 3534_G|A, 3731_C|T, 3902_C|T, 3989_T|C, 4448_T|C, 4547_C|A, 5937_T|C, 6008_C|T, 6179_C|T, 6422_T|C, 6542_C|T, 6983_A|G, 7310_G|A, 7451_A|C, 7633_T|C,
7805_T|C, 8069_T|C, 8621_G|A, 9305_C|T, 9353_T|C, 9602_G|A, 10164_A|G, 10382_A|T, 10384_C|T, 10390_T|C, 10561_T|C
Case 4 (A.1): KY765317.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-7,10-49 | Gap history (edge excluded): 7-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.961604 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
4.49497 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6422_T|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): KY765322.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 10-11 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-8,11-50 | Gap history (edge excluded): 8-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
1.103844 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
4.49497 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 56_G|A, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6422_T|C, 6725_T|C, 6737_C|T, 6755_C|T,
6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054473.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-6,9-50 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.760176 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
4.965631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): MF801407.1
| Target: 995 samples | Number of changes: 44 | |
| BC: A.1.NmC1 + A.1 | BC BR: 3-4 | BC BR coord: 427 - 428 |
| Direction L1: << | Initial region span: 1-3,5-44 | Gap history (edge excluded): 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.42e-226 | Rec. model vs L2: 2.87e+04 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
3 |
-8.113528 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
4.068162 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 81_T|G, 254_A|G, 272_A|G, 1616_C|T, 1667_C|T, 2030_T|G, 2049_T|C, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3200_A|G, 3218_T|A, 3247_A|T, 3332_G|A,
3401_C|T, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3874_C|T, 4460_T|A, 4784_G|A, 5937_T|C, 6327_A|C, 6377_A|G, 6514_T|C, 6725_T|C, 6737_C|T, 6983_A|G, 7307_T|C, 7451_A|C, 7633_T|C, 7805_T|C,
8045_T|C, 9240_C|T, 9305_C|T, 9353_T|C, 10541_C|T, 10561_T|C
Case 4 (A.1): KY606274.1
| Target: 995 samples | Number of changes: 51 | |
| BC: A.1 + A.1 | BC BR: 23-24 | BC BR coord: 3730 - 3731 |
| Direction L1: << | Initial region span: 1-22,25-51 | Gap history (edge excluded): 22-25 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.97e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
22 |
0.805639 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
25 |
4.472903 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 71_GG|AC, 732_G|A, 967_C|A, 1615_TC|AG, 1765_G|C, 1865_T|C, 1971_T|G, 2375_C|T, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3308_T|C, 3332_G|A, 3365_A|G, 3502_G|A,
3534_G|A, 3617_G|A, 3674_T|C, 3722_T|C, 3731_C|T, 3863_G|A, 4784_G|A, 5195_G|A, 5315_A|G, 5629_.|C, 5632, 5780_GAC|CTG, 5937_T|C, 6259_T|C, 6327_A|C, 6346_C|T, 6461_A|G, 6725_T|C, 6737_C|T,
6857_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8446_G|A, 8636_C|T, 9240_C|T, 9305_C|T, 9353_T|C, 10080_T|A, 10082_GAT|ACA, 10554
Case 4 (A.1): OK054396.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-6,9-50 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.760176 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
4.965631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): PP431235.1
| Target: 995 samples | Number of changes: 41 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 23-24, 38-39 | BC BR coord: 3898 - 3899, 10163 - 10164 |
| Direction L1: >> | Initial region span: 1-9,29-38,39-41 | Gap history (edge excluded): 9-39 -> 9-29 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.37e-22 | |
| Rec. model vs L1: 1.51e-34 | Rec. model vs L2: 4.23e-07 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
9 |
11.98615 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
29 |
0.761912 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
39 |
0.000000 |
-51.111068 |
202.222136 |
1.365980e-22 |
|
|
|
| A.1.NmC1 |
0 |
39 |
-1.668203 |
-122.297170 |
344.594340 |
1.660319e-53 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
39 |
3.594399 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 575_T|C, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 1952_A|G, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3902_C|T, 3989_T|C, 4562_C|T, 5937_T|C, 6008_C|T, 6704_G|A, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 7925_C|T, 8051_T|C, 9305_C|T, 9353_T|C, 9800_C|T,
10164_A|G, 10378_A|G, 10561_T|C
Case 4 (A.1): MF801404.1
| Target: 995 samples | Number of changes: 42 | |
| BC: A.1 + A.1 | BC BR: 12-13 | BC BR coord: 3730 - 3731 |
| Direction L1: << | Initial region span: 1-12,15-42 | Gap history (edge excluded): 12-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.24e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
12 |
0.646224 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
15 |
3.793318 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 227_T|A, 254_A|G, 500_A|G, 1816_C|A, 2375_C|T, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3534_G|A, 3554_T|C, 3617_G|A, 3731_C|T, 3788_G|A, 3863_G|A, 4130_A|G, 4576_C|A, 4651_T|C, 4784_G|A,
5102_T|C, 5108_C|A, 5111_C|A, 5117_G|A, 5119_G|A, 5123_G|A, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6401_C|T, 6404_C|T, 6725_T|C, 6737_C|T, 6983_A|G, 7633_T|C, 7805_T|C, 9240_C|T, 9305_C|T,
9353_T|C, 10163_T|C, 10340_C|T, 10561_T|C
Case 4 (A.1): KY765318.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-7,10-49 | Gap history (edge excluded): 7-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.961604 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
4.441861 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4154_A|G, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): KY765321.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-8,11-49 | Gap history (edge excluded): 8-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
1.103844 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
4.539923 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 56_G|A, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4154_A|G, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T,
6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C
Case 4 (A.1): OK054469.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-7,10-49 | Gap history (edge excluded): 7-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.961604 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
4.441861 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4154_A|G, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): KY693679.1
| Target: 995 samples | Number of changes: 52 | |
| BC: A.1.NmC2 + A.1 | BC BR: 8-9 | BC BR coord: 1405 - 1406 |
| Direction L1: >> | Initial region span: 1-5,35-52 | Gap history (edge excluded): 5-35 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.13e-108 | Rec. model vs L2: 1.23e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
5 |
9.392444 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
35 |
0.495823 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 980_C|T, 1398_C|T, 1421_C|T, 1592_T|C, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A,
3218_T|A, 3332_G|A, 3338_T|C, 3459_C|T, 3534_G|A, 3646_T|C, 3731_C|T, 3902_C|T, 3989_T|C, 4448_T|C, 4547_C|A, 5495_T|C, 5888_T|C, 5937_T|C, 6008_C|T, 6179_C|T, 6422_T|C, 6429_C|T, 6542_C|T,
6983_A|G, 7310_G|A, 7451_A|C, 7633_T|C, 7805_T|C, 8069_T|C, 8621_G|A, 8717_T|C, 9305_C|T, 9353_T|C, 10164_A|G, 10382_A|T, 10384_C|T, 10561_T|C
Case 4 (A.1): OK054465.1
| Target: 995 samples | Number of changes: 51 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-7,10-51 | Gap history (edge excluded): 7-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.961604 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
4.965631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6914_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8903_A|T, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C, 10617_C|T
Case 4 (A.1): OK054399.1
| Target: 995 samples | Number of changes: 46 | |
| BC: A.1 + A.1 | BC BR: 6-7 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-6,9-46 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.749621 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
4.062776 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C,
7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054466.1
| Target: 995 samples | Number of changes: 47 | |
| BC: A.1 + A.1 | BC BR: 7-8 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-5,8-47 | Gap history (edge excluded): 5-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.549382 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
4.441861 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1616_C|T, 1655_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A,
3731_C|T, 3863_G|A, 3918_C|T, 4154_A|G, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G, 6983_A|G, 7451_A|C,
7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): MW122387.1
| Target: 995 samples | Number of changes: 51 | |
| BC: A.1 + A.1 | BC BR: 45-46 | BC BR coord: 9202 - 9203 |
| Direction L1: >> | Initial region span: 1-44,47-51 | Gap history (edge excluded): 44-47 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.10e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
44 |
3.802391 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
47 |
0.315947 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 346_T|C, 779_T|C, 1187_G|T, 1412_C|T, 1475_G|A, 1499_A|G, 1616_C|T, 1904_C|T, 2375_C|T, 2426_T|C, 2627_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3566_T|C, 3593_T|C, 3700_G|A, 3731_C|T, 4883_C|T, 5087_T|C, 5156_T|C, 5315_A|G, 5444_C|T, 5450_T|C, 5651_C|T, 5937_T|C, 5956_T|A, 6503_G|A, 6536_C|T, 6671_T|C, 6983_A|G,
7451_A|C, 7505_C|T, 7633_T|C, 8467_T|C, 8651_C|T, 8852_T|C, 9017_T|C, 9203_A|G, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9632_T|C
Case 4 (A.1): OK054445.1
| Target: 995 samples | Number of changes: 47 | |
| BC: A.1 + A.1 | BC BR: 41-42 | BC BR coord: 8006 - 8007 |
| Direction L1: >> | Initial region span: 1-37,42-47 | Gap history (edge excluded): 37-42 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.28e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
37 |
4.168624 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
42 |
0.913946 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 424_C|T, 1100_C|T, 1616_C|T, 1706_A|G, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A,
4157_C|T, 4751_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5342_T|C, 5774_C|T, 5937_T|C, 6236_T|C, 6327_A|C, 6383_C|A, 6419_T|C, 6431_G|A, 6725_T|C, 6737_C|T, 6764_T|C, 6983_A|G, 7226_A|G, 7451_A|C,
7633_T|C, 7652_C|T, 7805_T|C, 8600_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10040_A|G, 10202_A|G
Case 4 (A.1): OK054487.1
| Target: 995 samples | Number of changes: 48 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-7,10-48 | Gap history (edge excluded): 7-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.961604 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
4.25964 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G, 6983_A|G,
7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): MF098767.1
| Target: 995 samples | Number of changes: 39 | |
| BC: A.1 + A.1 | BC BR: 19-20 | BC BR coord: 3988 - 3989 |
| Direction L1: << | Initial region span: 1-12,20-39 | Gap history (edge excluded): 12-20 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.62e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
12 |
1.010384 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
20 |
3.055187 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1616_C|T, 1919_C|T, 2279_T|A, 2450_A|G, 2681_G|A, 2717_C|T, 2724_T|C, 2925_G|A, 3055_A|G, 3059_G|A, 3071_A|G, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3594_C|T, 3731_C|T, 3917_C|T,
4922_A|T, 5423_A|G, 5937_T|C, 6011_A|G, 6092_C|T, 6561_C|A, 6908_T|C, 7451_A|C, 7481_C|T, 7633_T|C, 7707_G|T, 7805_T|C, 8045_T|C, 8297_A|G, 8606_C|T, 9120_C|T, 9287_C|T, 9305_C|T, 9353_T|C,
9355_G|A
Case 4 (A.1): OK054391.1
| Target: 995 samples | Number of changes: 45 | |
| BC: A.1 + A.1 | BC BR: 4-5 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-3,11-45 | Gap history (edge excluded): 3-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.35e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
3 |
0.451598 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
1.727605 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 740_G|T, 1439_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2426_T|C, 2648_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3143_C|T, 3186_G|A, 3218_T|A, 3332_G|A, 3527_A|G,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4287_G|A, 4784_G|A, 4949_G|A, 5195_G|A, 5315_A|G, 5675_T|C, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 7851_C|T,
9240_C|T, 9305_C|T, 9353_T|C, 10561_T|C, 10695_A|G, 10703_T|A, 10725_A|G
Case 4 (A.1): OK054424.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 10-11 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-8,11-50 | Gap history (edge excluded): 8-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.23e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
0.943154 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
4.243656 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 491_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2190_A|C, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6185_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T,
6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054448.1
| Target: 995 samples | Number of changes: 39 | |
| BC: A.1 + A.1 | BC BR: 4-5 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-4,7-39 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.330881 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
2.895257 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1514_C|T, 1616_C|T, 1655_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T,
3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7451_A|C, 7464_A|G, 7633_T|C, 7805_T|C, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C,
10561_T|C
Case 4 (A.1): OK054410.1
| Target: 995 samples | Number of changes: 44 | |
| BC: A.1 + A.1 | BC BR: 37-38 | BC BR coord: 8006 - 8007 |
| Direction L1: >> | Initial region span: 1-33,38-44 | Gap history (edge excluded): 33-38 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 6.24e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
33 |
3.51945 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
38 |
1.183426 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 1616_C|T, 1706_A|G, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4751_T|C, 4784_G|A, 5195_G|A,
5315_A|G, 5342_T|C, 5937_T|C, 6236_T|C, 6327_A|C, 6383_C|A, 6419_T|C, 6431_G|A, 6725_T|C, 6732_G|C, 6737_C|T, 6764_T|C, 6983_A|G, 7226_A|G, 7451_A|C, 7633_T|C, 7652_C|T, 7805_T|C, 8434_A|G,
9240_C|T, 9353_T|C, 9475_G|A, 10040_A|G, 10202_A|G, 10561_T|C
Case 4 (A.1): OK054404.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-6,9-50 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.760176 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
4.965631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054429.1
| Target: 995 samples | Number of changes: 52 | |
| BC: A.1 + A.1 | BC BR: 10-11 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-8,11-52 | Gap history (edge excluded): 8-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
1.196935 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
4.816652 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 1941_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6662_G|A, 6725_T|C, 6737_C|T, 6755_C|T,
6872_C|T, 6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9518_A|G, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054452.1
| Target: 995 samples | Number of changes: 51 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-6,9-51 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.760176 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
5.200961 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6350_G|A, 6725_T|C, 6737_C|T, 6755_C|T,
6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054386.1
| Target: 995 samples | Number of changes: 46 | |
| BC: A.1 + A.1 | BC BR: 38-39 | BC BR coord: 7516 - 7517 |
| Direction L1: >> | Initial region span: 1-33,41-46 | Gap history (edge excluded): 33-41 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.15e-13 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
33 |
3.87673 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
41 |
0.678615 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 431_T|C, 512_C|T, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4157_C|T,
4286_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5937_T|C, 6071_C|T, 6327_A|C, 6383_C|A, 6419_T|C, 6431_G|A, 6537_A|G, 6678_T|C, 6725_T|C, 6737_C|T, 6764_T|C, 6983_A|G, 6987_A|G, 7224_T|C, 7451_A|C,
7633_T|C, 7805_T|C, 8258_A|G, 9240_C|T, 9305_C|T, 9353_T|C, 10040_A|G, 10751_G|A
Case 4 (A.1): OK054394.1
| Target: 995 samples | Number of changes: 38 | |
| BC: A.1 + A.1 | BC BR: 6-7 | BC BR coord: 2798 - 2799 |
| Direction L1: << | Initial region span: 1-6,15-38 | Gap history (edge excluded): 6-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.31e-09 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.348379 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
15 |
3.185527 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 882_T|G, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4236_A|G, 4592_A|G,
4784_G|A, 5139_G|A, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6461_A|G, 6725_T|C, 6737_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8375_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10561_T|C, 10702_A|C
Case 4 (A.1): OK054443.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 5-6 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-5,8-49 | Gap history (edge excluded): 5-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.7983 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
4.965631 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G, 6983_A|G,
7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): OK054480.1
| Target: 995 samples | Number of changes: 51 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-6,9-51 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.38e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.760176 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
9 |
5.200961 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6350_G|A, 6725_T|C, 6737_C|T, 6755_C|T,
6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): MK269353.1
| Target: 995 samples | Number of changes: 48 | |
| BC: A.1 + A.1 | BC BR: 39-40 | BC BR coord: 7516 - 7517 |
| Direction L1: >> | Initial region span: 1-39,46-48 | Gap history (edge excluded): 39-46 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.27e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
39 |
3.740661 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
46 |
0.705991 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 374_T|C, 725_A|G, 1616_C|T, 1706_A|G, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A,
4571_T|C, 4784_G|A, 5033_A|G, 5195_G|A, 5315_A|G, 5937_T|C, 6014_T|C, 6327_A|C, 6383_C|A, 6419_T|C, 6431_G|A, 6725_T|C, 6737_C|T, 6764_T|C, 6965_G|A, 6983_A|G, 7271_C|T, 7375_T|C, 7451_A|C,
7463_C|T, 7633_T|C, 7805_T|C, 8360_A|G, 9305_C|T, 9353_T|C, 9366_T|C, 9464_C|T, 10040_A|G, 10300_10302
Case 4 (A.1): MF434522.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 7-8 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-5,14-50 | Gap history (edge excluded): 5-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.21e-08 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.770223 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
14 |
4.181436 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 722_C|T, 1180_T|C, 1298_T|C, 1328_T|C, 1616_C|T, 1865_T|C, 2372_A|G, 2375_C|T, 2388_T|C, 2654_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2879_T|C, 2925_G|A, 3030_C|T, 3059_G|A, 3140_A|G,
3186_G|A, 3218_T|A, 3221_C|T, 3332_G|A, 3338_T|C, 3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4014_G|A, 4076_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6461_A|G, 6725_T|C, 6737_C|T,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 7898_C|T, 8246_A|G, 8762_A|G, 9240_C|T, 9305_C|T, 9353_T|C, 10390_T|C, 10561_T|C
Case 4 (A.1): KY272987.1
| Target: 995 samples | Number of changes: 162 | |
| BC: A.1 + A.1.NmC1 | BC BR: 156-157 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-79,159-162 | Gap history (edge excluded): 79-159 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.49e+09 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
79 |
0.857624 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
159 |
1.925944 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
101 |
1.598220 |
-1.41091 |
16.821819 |
37049.124492 |
* |
|
|
|
Target sequence
, 254_A|G, 407_G|A, 423_G|A, 428_T|C, 467_T|C, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 737_A|G, 773_T|C, 803_A|G, 884_A|G, 974_C|T, 1046_T|C, 1139_G|A, 1175_A|G, 1328_T|C, 1391_G|A, 1520_G|A,
1616_C|T, 1718_C|T, 1748_T|C, 1763_A|G, 1781_C|T, 1875_T|C, 1896_T|C, 1922_C|T, 2066_C|T, 2309_C|T, 2375_C|T, 2411_C|T, 2436_A|G, 2471_A|G, 2519_G|A, 2522_G|A, 2525_G|A, 2576_G|A, 2606_C|T,
2648_T|G, 2681_G|A, 2724_T|C, 2846_G|A, 2925_G|A, 2969_C|T, 3008_A|G, 3014_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3332_G|A,
3340_A|G, 3534_G|A, 3587_T|C, 3615_C|T, 3697_T|C, 3731_C|T, 3869_CT|TC, 3885_T|C, 3893_T|A, 3977_T|C, 3989_T|C, 3992_C|T, 4031_C|T, 4085_T|C, 4106_A|G, 4145_C|T, 4238_C|T, 4244_A|G, 4295_A|G,
4403_A|G, 4445_C|T, 4454_G|T, 4493_C|T, 4523_G|A, 4595_C|T, 4733_T|C, 4817_C|T, 4943_G|A, 4961_T|C, 5000_T|C, 5003_C|T, 5060_T|C, 5153_G|A, 5210_G|A, 5282_T|C, 5369_C|T, 5375_A|G, 5387_C|T,
5405_C|T, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C, 5937_T|C, 6101_T|C, 6119_C|T, 6155_A|G, 6164_C|T, 6230_A|G, 6233_T|C, 6275_A|T, 6473_T|A, 6635_T|C, 6645_C|T, 6684_A|C, 6807_T|C, 6851_C|T,
6890_A|G, 6911_C|T, 6935_G|A, 6938_A|G, 6983_A|G, 7037_C|T, 7043_T|C, 7049_CT|TC, 7079_A|G, 7364_T|C, 7451_A|C, 7517_C|T, 7633_T|C, 7796_C|T, 7805_T|C, 7808_T|C, 7964_A|G, 8007_G|A, 8105_C|T,
8177_T|C, 8408_T|C, 8516_A|G, 8606_C|T, 8787_G|A, 9017_T|C, 9110_G|A, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9464_C|T, 9503_C|T, 9527_A|G, 9671_T|A, 9797_T|C, 9848_G|C, 9881_C|T, 9935_A|G,
10052_T|C, 10127_T|C, 10275_A|C, 10361_T|C, 10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): MW122443.1
| Target: 995 samples | Number of changes: 55 | |
| BC: A.1 + A.1 | BC BR: 25-26 | BC BR coord: 3898 - 3899 |
| Direction L1: << | Initial region span: 1-24,29-55 | Gap history (edge excluded): 24-29 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.82e-12 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
24 |
2.335119 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
29 |
3.252077 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 346_T|C, 398_T|C, 779_T|C, 1187_G|T, 1228_A|G, 1475_G|A, 1499_A|G, 1616_C|T, 1904_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2855_C|T, 2925_G|A, 3041_T|C, 3059_G|A, 3140_A|G, 3186_G|A,
3218_T|A, 3332_G|A, 3534_G|A, 3566_T|C, 3593_T|C, 3731_C|T, 4457_A|G, 4502_C|T, 4520_C|T, 4883_C|T, 5087_T|C, 5156_T|C, 5315_A|G, 5937_T|C, 6167_T|A, 6629_T|A, 6659_G|A, 6671_T|C, 6983_A|G,
7010_T|A, 7094_T|C, 7151_T|C, 7451_A|C, 7505_C|T, 7633_T|C, 7748_C|T, 7805_T|C, 8852_T|C, 9017_T|C, 9242_C|T, 9305_C|T, 9335_C|T, 9353_T|C, 9591_T|C, 9918_C|A, 10262_T|C
Case 4 (A.1): KX922708.1
| Target: 995 samples | Number of changes: 52 | |
| BC: A.1 + A.1 | BC BR: 14-15 | BC BR coord: 3031 - 3032 |
| Direction L1: << | Initial region span: 1-14,27-52 | Gap history (edge excluded): 14-27 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.16e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
14 |
1.646494 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
27 |
3.792913 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 506_T|C, 1571_T|C, 1616_C|T, 2060_T|C, 2408_G|A, 2435_T|C, 2460_T|C, 2681_G|A, 2717_C|T, 2724_T|C, 2861_C|T, 2925_G|A, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3722_T|C, 3731_C|T, 4166_G|A, 5198_T|C, 5249_C|T, 5369_C|T, 5636_A|G, 5840_T|C, 5937_T|C, 6149_C|T, 6278_C|T, 6908_T|C, 7451_A|C, 7601_A|G, 7633_T|C, 7805_T|C, 8006_C|T, 8045_T|C, 8250_C|T,
8258_A|G, 8606_C|T, 8621_G|A, 8631_A|G, 8852_T|C, 9287_C|T, 9305_C|T, 9311_G|A, 9353_T|C, 9395_C|T, 10090_C|T, 10301_T|G, 10340_C|T, 10561_T|C
Case 4 (A.1): OK054425.1
| Target: 995 samples | Number of changes: 48 | |
| BC: A.1 + A.1 | BC BR: 9-10 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-7,10-48 | Gap history (edge excluded): 7-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.36e-05 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.961604 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
4.25964 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 810_T|C, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G, 6983_A|G,
7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): OQ661916.1
| Target: 995 samples | Number of changes: 167 | |
| BC: A.1 + A.1.NmC1 | BC BR: 163-164 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-53,164-167 | Gap history (edge excluded): 53-164 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.87e+00 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
53 |
1.034327 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
164 |
1.925944 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
131 |
1.240166 |
-1.739254 |
13.478508 |
0.171187 |
* |
|
|
|
Target sequence
, 50_A|G, 254_A|G, 346_T|C, 423_G|A, 434_T|C, 467_T|C, 523_A|G, 530_T|C, 558_T|C, 575_T|C, 617_C|T, 653_G|A, 719_T|C, 803_A|G, 884_A|G, 941_C|T, 962_T|C, 1175_A|G, 1193_C|T, 1325_C|T,
1493_T|C, 1616_C|T, 1718_C|T, 1896_T|C, 1922_C|T, 2060_T|A, 2066_C|T, 2132_T|C, 2207_A|G, 2375_C|T, 2394_A|T, 2411_C|T, 2460_T|C, 2492_T|C, 2519_G|A, 2525_G|A, 2576_G|A, 2594_T|C, 2606_C|T,
2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2804_C|T, 2846_G|A, 2925_G|A, 2960_T|C, 2973_G|A, 2978_T|C, 3002_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3131_G|A, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A,
3218_T|A, 3254_T|C, 3266_C|T, 3308_T|C, 3332_G|A, 3344_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3885_T|C, 3989_T|C, 4052_G|A, 4085_T|C, 4238_C|T, 4241_A|G, 4295_A|G, 4409_A|T, 4454_G|A, 4493_C|T,
4523_G|A, 4652_A|G, 4733_T|C, 4850_C|T, 4889_C|T, 4914_C|G, 4952_C|T, 5000_T|C, 5060_T|C, 5177_G|A, 5198_T|C, 5238_G|A, 5267_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5501_A|G, 5546_T|C, 5591_T|C,
5639_G|A, 5744_A|G, 5828_T|C, 5906_G|A, 5937_T|C, 5987_G|T, 6056_C|T, 6101_T|C, 6155_A|G, 6164_C|T, 6179_C|T, 6251_C|A, 6275_A|C, 6363_C|T, 6473_T|A, 6684_A|C, 6807_T|C, 6827_T|C, 6890_A|G,
6911_C|T, 6983_A|G, 7037_C|T, 7050_T|C, 7064_T|C, 7079_A|G, 7176_G|A, 7331_G|A, 7358_T|C, 7367_A|G, 7451_A|C, 7496_G|A, 7506_C|T, 7517_C|T, 7633_T|C, 7637_A|G, 7739_C|T, 7805_T|C, 7898_C|T,
8006_CG|TA, 8408_T|C, 8516_A|G, 8606_C|T, 8651_C|T, 8753_T|A, 8804_T|C, 9017_T|C, 9098_T|C, 9206_A|G, 9222_G|A, 9303_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9473_G|A, 9503_C|T, 9509_T|C,
9527_A|G, 9582_C|T, 9591_T|C, 9620_C|T, 9623_C|T, 9746_A|G, 9806_C|T, 9926_T|C, 10161_G|A, 10262_T|C, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): OK054403.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 5-6 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-5,8-50 | Gap history (edge excluded): 5-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.7983 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
5.200961 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 1904_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3517_G|A, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 3918_C|T, 4160_T|C, 4373_C|T, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6350_G|A, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G,
6983_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 9125_G|A, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 9410_C|T, 10052_T|C, 10561_T|C
Case 4 (A.1): MW122429.1
| Target: 995 samples | Number of changes: 50 | |
| BC: A.1 + A.1 | BC BR: 25-26 | BC BR coord: 3898 - 3899 |
| Direction L1: << | Initial region span: 1-22,26-50 | Gap history (edge excluded): 22-26 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.13e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
22 |
1.171311 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
26 |
2.878853 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 346_T|C, 662_T|C, 779_T|C, 1187_G|T, 1475_G|A, 1499_A|G, 1616_C|T, 1904_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2855_C|T, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3566_T|C, 3593_T|C, 3722_T|C, 3731_C|T, 3821_T|C, 4883_C|T, 5087_T|C, 5156_T|C, 5315_A|G, 5937_T|C, 6007_A|G, 6629_T|A, 6671_T|C, 6920_A|G, 6983_A|G, 7094_T|C, 7151_T|C, 7451_A|C,
7505_C|T, 7633_T|C, 7805_T|C, 7952_C|T, 8852_T|C, 8897_A|G, 9017_T|C, 9242_C|T, 9262_A|T, 9296_C|T, 9305_C|T, 9353_T|C
Case 4 (A.1): OK054370.1
| Target: 995 samples | Number of changes: 38 | |
| BC: A.1 + A.1 | BC BR: 4-5 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-4,7-38 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.19e-04 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.586317 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
3.182625 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 1380_C|T, 1514_C|T, 1616_C|T, 1655_C|T, 2192_C|T, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 4784_G|A,
5195_G|A, 5315_A|G, 5937_T|C, 6029_G|A, 6152_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6938_A|G, 6983_A|G, 7451_A|C, 7633_T|C, 9211_G|A, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10561_T|C
Case 4 (A.1): PP431245.1
| Target: 995 samples | Number of changes: 38 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 22-23, 34-35 | BC BR coord: 3898 - 3899, 9304 - 9305 |
| Direction L1: >> | Initial region span: 1-18,28-34,35-38 | Gap history (edge excluded): 18-35 -> 18-28 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.65e-13 | |
| Rec. model vs L1: 1.21e-22 | Rec. model vs L2: 5.01e-06 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
18 |
14.324339 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
28 |
0.490344 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
35 |
0.000000 |
-72.070200 |
222.140399 |
1.859184e-31 |
|
|
|
| A.1.NmC2 |
0 |
35 |
-1.529105 |
-32.743139 |
143.486279 |
2.228194e-14 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
35 |
2.741564 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 902_T|G, 1398_C|T, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3350_G|A,
3459_C|T, 3534_G|A, 3731_C|T, 3902_C|T, 3989_T|C, 5267_T|C, 5937_T|C, 6008_C|T, 6233_T|C, 6983_A|G, 7064_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8390_G|A, 9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C
Case 4 (A.1): MW915412.1
| Target: 995 samples | Number of changes: 79 | |
| BC: A.1 + A.1.NmC1 | BC BR: 75-76 | BC BR coord: 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-5,76-79 | Gap history (edge excluded): 5-76 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.77e+06 | Rec. model vs L2: 3.99e-245 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.90573 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
76 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 19_A|G, 212_C|T, 233_G|A, 254_A|G, 320_A|G, 523_A|G, 558_T|C, 653_G|A, 716_C|T, 719_T|C, 1175_A|G, 1232_A|G, 1343_C|T, 1398_C|T, 1538_A|G, 1568_C|T, 1616_C|T, 1760_A|G, 1994_C|T, 2375_C|T,
2498_G|A, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 2936_A|G, 3035_C|T, 3038_T|C, 3059_G|A, 3070_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3248_T|C, 3254_T|C, 3311_A|G, 3455_G|A, 3482_T|C,
3518_C|T, 3534_G|A, 3731_C|T, 3902_C|T, 4085_T|C, 4454_G|A, 4472_T|C, 4499_C|A, 4676_A|C, 4937_C|T, 5000_T|C, 5060_T|C, 5375_A|G, 5564_C|T, 5828_T|C, 5937_T|C, 5975_C|T, 6056_C|T, 6140_A|G,
6254_T|C, 6266_T|C, 6269_C|T, 6308_C|T, 6311_G|A, 6363_C|T, 7451_A|C, 7517_C|T, 7633_T|C, 7805_T|C, 7836_C|A, 8007_G|A, 8045_T|C, 8144_A|T, 8408_T|C, 8477_T|A, 9017_T|C, 10392_A|G, 10477_T|C,
10561_T|C, 10579_A|G
Case 4 (A.1): MW165880.1
| Target: 995 samples | Number of changes: 53 | |
| BC: A.1 + A.1 | BC BR: 23-24 | BC BR coord: 3898 - 3899 |
| Direction L1: << | Initial region span: 1-22,25-53 | Gap history (edge excluded): 22-25 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.35e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
22 |
1.626525 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
25 |
3.848374 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 185_C|T, 254_A|G, 456_C|T, 497_T|C, 1475_G|A, 1616_C|T, 1904_C|T, 2375_C|T, 2600_C|T, 2621_A|G, 2681_G|A, 2724_T|C, 2925_G|A, 3056_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3534_G|A, 3566_T|C, 3593_T|C, 3731_C|T, 3911_A|G, 4394_T|C, 4982_T|C, 5156_T|C, 5213_A|G, 5315_A|G, 5774_C|T, 5937_T|C, 6599_G|A, 6629_T|A, 6671_T|C, 6776_A|G, 6983_A|G, 7094_T|C, 7379_T|C,
7451_A|C, 7633_T|C, 7805_T|C, 7917_A|C, 8165_C|T, 8474_C|T, 9137_T|C, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9824_T|C, 9971_T|C, 10421_C|T, 10561_T|C
Case 4 (A.1): MW122411.1
| Target: 995 samples | Number of changes: 49 | |
| BC: A.1 + A.1 | BC BR: 16-17 | BC BR coord: 3136 - 3137 |
| Direction L1: << | Initial region span: 1-13,22-49 | Gap history (edge excluded): 13-22 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.98e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
13 |
1.831311 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
22 |
3.219804 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 346_T|C, 779_T|C, 1187_G|T, 1475_G|A, 1499_A|G, 1616_C|T, 1668_A|G, 1904_C|T, 2298_T|C, 2375_C|T, 2681_G|A, 2855_C|T, 2925_G|A, 3032_A|T, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3534_G|A, 3566_T|C, 3593_T|C, 3731_C|T, 4883_C|T, 5087_T|C, 5156_T|C, 5315_A|G, 5937_T|C, 6629_T|A, 6671_T|C, 6983_A|G, 7010_T|A, 7094_T|C, 7151_T|C, 7451_A|C, 7505_C|T, 7633_T|C,
7805_T|C, 8153_C|T, 8510_C|T, 8852_T|C, 9017_T|C, 9242_C|T, 9296_C|T, 9305_C|T, 9353_T|C, 9643_G|A, 10262_T|C
Case 4 (A.1): KY328290.1
| Target: 995 samples | Number of changes: 125 | |
| BC: A.1 + A.1 | BC BR: 96-97 | BC BR coord: 7450 - 7451 |
| Direction L1: << | Initial region span: 1-6,118-125 | Gap history (edge excluded): 6-118 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.97e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.053606 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
118 |
1.558047 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 159_AA|GG, 212_C|T, 254_A|G, 308_T|C, 423_G|A, 467_T|C, 479_G|A, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 803_A|G, 884_A|G, 1175_A|G, 1616_C|T, 1920_A|T, 1960_T|A, 2066_C|G, 2084_T|A, 2375_C|T,
2411_C|T, 2519_G|A, 2525_G|A, 2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2846_G|A, 2925_G|A, 3038_T|C, 3059_G|A, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C,
3266_C|T, 3332_G|A, 3395_T|A, 3518_C|T, 3534_G|A, 3731_C|T, 3885_T|C, 3989_T|C, 3992_C|T, 4085_T|C, 4106_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4652_A|G, 4733_T|C,
4790_A|G, 4850_C|T, 4952_C|T, 5000_T|C, 5003_C|T, 5060_T|C, 5091_A|G, 5177_G|A, 5267_T|C, 5333_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5546_T|C, 5591_T|C, 5744_A|G, 5780_G|A, 5828_T|C, 5888_T|C,
5937_T|C, 6056_C|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|T, 6363_C|T, 6473_T|A, 6684_A|C, 6807_T|C, 6890_A|G, 6911_C|T, 6980_G|A, 6983_A|G, 7037_C|T, 7050_T|C, 7079_A|G, 7358_T|C, 7451_AG|CA,
7517_C|T, 7523_T|C, 7633_T|C, 7784_G|A, 7805_T|C, 7826_T|C, 8007_G|A, 8105_C|T, 8165_C|T, 8394_C|G, 8408_T|C, 8516_A|G, 8606_C|T, 8615_G|A, 8631_A|G, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G,
9455_G|A, 9500_T|C, 9503_C|T, 9509_T|C, 9527_A|G, 9533_T|C, 9591_T|C, 9884_G|A, 10163_T|A, 10262_T|C
Case 4 (A.1): MW122412.1
| Target: 995 samples | Number of changes: 53 | |
| BC: A.1 + A.1 | BC BR: 10-11 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-10,23-53 | Gap history (edge excluded): 10-23 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.30e-09 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
1.241955 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
23 |
2.997812 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 346_T|C, 779_T|C, 1187_G|T, 1196_C|T, 1250_C|T, 1475_G|A, 1499_A|G, 1616_C|T, 1904_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 2975_A|G, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A,
3254_T|C, 3332_G|A, 3534_G|A, 3566_T|C, 3593_T|C, 3731_C|T, 4883_C|T, 5087_T|C, 5156_T|C, 5315_A|G, 5831_C|T, 5936_TT|CC, 6629_T|A, 6671_T|C, 6982_GA|AG, 7094_T|C, 7151_T|C, 7264_T|C,
7313_T|C, 7451_A|C, 7505_C|T, 7633_T|C, 7805_T|C, 8076_G|T, 8477_T|C, 8540_A|G, 8852_T|C, 9017_T|C, 9242_C|T, 9296_C|T, 9305_C|T, 9331_C|T, 9353_T|C, 9977_C|T
Case 4 (A.1): MW915413.1
| Target: 995 samples | Number of changes: 92 | |
| BC: A.1 + A.1 | BC BR: 85-86 | BC BR coord: 9439 - 9440 |
| Direction L1: << | Initial region span: 1-4,86-92 | Gap history (edge excluded): 4-86 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.27e-11 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.536868 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
7 |
-9.392192 |
-328.607928 |
883.215856 |
1.418114e-139 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
86 |
1.647312 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 19_A|G, 233_G|A, 254_A|G, 476_G|A, 523_A|G, 558_T|C, 653_G|A, 716_C|T, 1175_A|G, 1343_C|T, 1398_C|T, 1538_A|G, 1568_C|T, 1616_C|T, 1760_A|G, 1994_C|T, 2375_C|T, 2498_G|A, 2654_C|T,
2681_G|A, 2724_T|C, 2925_G|A, 2936_A|G, 3035_C|T, 3038_T|C, 3059_G|A, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3248_T|C, 3254_T|C, 3311_A|G, 3332_G|A, 3386_A|G, 3455_G|A, 3482_T|C, 3518_C|T,
3534_G|A, 3627_A|G, 3731_C|T, 3902_C|T, 4085_T|C, 4454_G|A, 4472_T|C, 4499_C|A, 4676_A|C, 5000_T|C, 5060_T|C, 5375_A|G, 5564_C|T, 5828_T|C, 5937_T|C, 5975_C|T, 6056_C|T, 6140_A|G, 6254_T|C,
6266_T|C, 6269_C|T, 6308_C|T, 6311_G|A, 6363_C|T, 6629_T|C, 6698_A|G, 6731_G|A, 6797_T|C, 6917_T|C, 6981_G|A, 6983_A|G, 7014_C|T, 7451_A|C, 7457_C|T, 7517_C|T, 7633_T|C, 7805_T|C, 8007_G|A,
8045_T|C, 8144_A|T, 8408_T|C, 8477_T|A, 9017_T|C, 9305_C|T, 9344_G|A, 9353_T|C, 9434_A|G, 9569_A|G, 9596_G|A, 9757_A|G, 9800_C|T, 9866_A|G, 9869_T|C, 10223_C|T
Case 4 (A.1): MW915414.1
| Target: 995 samples | Number of changes: 100 | |
| BC: A.1 + A.1.NmC1 | BC BR: 96-97 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-4,97-100 | Gap history (edge excluded): 4-97 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.60e-01 | Rec. model vs L2: 3.27e-317 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.670399 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
97 |
4.261319 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 19_A|G, 233_G|A, 254_A|G, 371_G|A, 523_A|G, 558_T|C, 629_A|G, 653_G|A, 716_C|T, 1143_G|A, 1175_A|G, 1286_T|C, 1538_A|G, 1568_C|T, 1616_C|T, 1649_T|A, 1760_A|G, 1901_T|C, 2041_T|C, 2375_C|T,
2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 2936_A|G, 3035_C|T, 3059_G|A, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3242_C|T, 3248_T|C, 3311_A|G, 3332_G|A, 3455_G|A, 3482_T|C, 3518_C|T, 3534_G|A,
3709_C|T, 3731_C|T, 3902_C|T, 4085_T|C, 4169_G|A, 4454_G|A, 4472_T|C, 4499_C|A, 4664_G|A, 5000_T|C, 5003_C|T, 5060_T|C, 5375_A|G, 5387_C|T, 5537_C|T, 5540_G|A, 5564_C|T, 5684_A|G, 5813_T|C,
5828_T|C, 5937_T|C, 5975_C|T, 6056_C|T, 6140_A|G, 6248_G|A, 6254_T|C, 6269_C|T, 6308_C|T, 6363_C|T, 6629_T|C, 6698_A|G, 6731_G|A, 6917_T|C, 6981_G|A, 6983_A|G, 7014_C|T, 7281_T|C, 7451_A|C,
7517_C|T, 7633_T|C, 7805_T|C, 8007_G|A, 8045_T|C, 8408_T|C, 8477_T|A, 8702_C|T, 9017_T|C, 9305_C|T, 9344_G|A, 9353_T|C, 9434_A|G, 9569_A|G, 9596_G|A, 9757_A|G, 9866_A|G, 10188_T|C, 10223_C|T,
10364_A|G, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): MH119185.1
| Target: 995 samples | Number of changes: 160 | |
| BC: A.1 + A.1.NmC1 | BC BR: 154-155 | BC BR coord: 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-51,158-160 | Gap history (edge excluded): 51-158 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.13e-02 | |
| Rec. model vs L1: 1.88e+14 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
51 |
1.968418 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
158 |
1.972602 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
145 |
0.600565 |
-1.268593 |
16.537187 |
1.328857e+08 |
* |
|
|
|
Target sequence
, 212_C|T, 254_A|G, 423_G|A, 467_T|C, 496_G|A, 523_A|G, 558_T|C, 575_T|C, 653_G|A, 719_T|C, 803_A|G, 884_A|G, 1097_T|A, 1160_T|C, 1175_A|G, 1263_T|C, 1325_C|T, 1616_C|T, 1718_C|T, 1777_C|T,
1875_T|C, 1896_T|C, 1922_C|T, 2060_T|A, 2066_C|T, 2132_T|C, 2207_A|G, 2233_A|G, 2375_C|T, 2394_A|T, 2411_C|T, 2460_T|C, 2492_T|C, 2519_G|A, 2525_G|A, 2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T,
2681_G|A, 2724_T|C, 2804_C|T, 2846_G|A, 2925_G|A, 2960_T|C, 2973_G|A, 3002_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3123_C|T, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T,
3290_A|T, 3308_T|C, 3332_G|A, 3344_C|T, 3500_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3885_T|C, 3917_C|A, 3989_T|C, 4085_T|C, 4238_C|T, 4295_A|G, 4415_T|C, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T,
4607_A|G, 4652_A|G, 4733_T|C, 4817_C|T, 4850_C|T, 4889_C|T, 4952_C|T, 5000_T|C, 5060_T|C, 5198_T|C, 5362_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5501_A|G, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C,
5937_T|C, 5987_G|C, 6056_C|T, 6101_T|C, 6152_C|T, 6155_A|G, 6164_C|T, 6275_A|C, 6359_C|T, 6363_C|T, 6473_T|A, 6684_A|C, 6785_T|C, 6807_T|C, 6890_A|G, 6979_A|G, 6983_A|G, 7037_C|T, 7050_T|C,
7064_T|C, 7079_A|G, 7085_A|C, 7358_T|C, 7367_A|G, 7451_A|C, 7517_C|T, 7633_T|C, 7637_A|G, 7739_C|T, 7805_T|C, 7898_C|T, 8007_G|A, 8105_C|T, 8126_T|C, 8408_T|C, 8516_A|G, 8606_C|T, 8651_C|T,
9017_T|C, 9098_T|C, 9206_A|G, 9222_G|A, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9473_G|A, 9500_T|C, 9503_C|T, 9509_T|C, 9527_A|G, 9582_C|T, 9591_T|C, 9620_C|T, 9623_C|T, 9806_C|T, 9926_T|C,
10161_G|A, 10376_G|A, 10392_A|G, 10409_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): MW122413.1
| Target: 995 samples | Number of changes: 56 | |
| BC: A.1 + A.1 | BC BR: 13-14 | BC BR coord: 3136 - 3137 |
| Direction L1: << | Initial region span: 1-10,20-56 | Gap history (edge excluded): 10-20 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.85e-01 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
0.826549 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
20 |
5.883501 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1616_C|T, 1904_C|T, 2093_T|C, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3014_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3459_C|T, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 4536_A|G, 4556_A|T, 4697_T|C, 4706_A|G, 4784_G|A, 4914_C|G, 5195_G|A, 5315_A|G, 5597_C|T, 5894_G|A, 5937_T|C, 5966_C|T, 6029_G|A, 6299_C|T, 6327_A|C, 6725_T|C,
6737_C|T, 6755_C|T, 6779_T|C, 6904_T|C, 6983_A|G, 7451_A|C, 7505_C|T, 7633_T|C, 7689_C|T, 7805_T|C, 7922_G|A, 8690_A|G, 9240_C|T, 9305_C|T, 9353_T|C, 10052_T|C, 10169_A|C, 10361_T|C
Case 4 (A.1): MT507047.1
| Target: 995 samples | Number of changes: 44 | |
| BC: A.1 + A.1 | BC BR: 8-9 | BC BR coord: 2404 - 2405 |
| Direction L1: << | Initial region span: 1-5,11-44 | Gap history (edge excluded): 5-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.89e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.687858 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
11 |
3.85001 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 637_T|C, 869_C|A, 968_G|A, 1115_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A,
3731_C|T, 3863_G|A, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7223_A|G, 7307_T|C, 7451_A|C, 7633_T|C, 7667_T|C, 7805_T|C,
8480_A|G, 9240_C|T, 9246_C|T, 9305_C|T, 9353_T|C, 10561_T|C
Case 4 (A.1): MT507048.1
| Target: 995 samples | Number of changes: 44 | |
| BC: A.1 + A.1 | BC BR: 5-6 | BC BR coord: 1990 - 1991 |
| Direction L1: << | Initial region span: 1-4,10-44 | Gap history (edge excluded): 4-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.89e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.452528 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
3.812157 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 637_T|C, 968_G|A, 1115_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A,
3731_C|T, 3863_G|A, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7223_A|G, 7307_T|C, 7451_A|C, 7633_T|C, 7667_T|C, 7805_T|C,
8480_A|G, 9240_C|T, 9246_C|T, 9305_C|T, 9353_T|C, 10561_T|C
Case 4 (A.1): MT507049.1
| Target: 995 samples | Number of changes: 46 | |
| BC: A.1 + A.1 | BC BR: 6-7 | BC BR coord: 1174 - 1175 |
| Direction L1: << | Initial region span: 1-6,12-46 | Gap history (edge excluded): 6-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.89e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.923188 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
12 |
4.005297 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 256_T|C, 637_T|C, 869_C|A, 968_G|A, 1115_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 3895_C|T, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7223_A|G, 7307_T|C, 7451_A|C, 7633_T|C,
7667_T|C, 7805_T|C, 8480_A|G, 9240_C|T, 9246_C|T, 9305_C|T, 9353_T|C, 10561_T|C
Case 4 (A.1): MT507050.1
| Target: 995 samples | Number of changes: 46 | |
| BC: A.1 + A.1 | BC BR: 6-7 | BC BR coord: 1174 - 1175 |
| Direction L1: << | Initial region span: 1-6,12-46 | Gap history (edge excluded): 6-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.89e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
0.923188 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
12 |
4.005297 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 256_T|C, 637_T|C, 869_C|A, 968_G|A, 1115_T|C, 1616_C|T, 2192_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2788_G|C, 2978_T|C, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A,
3617_G|A, 3731_C|T, 3863_G|A, 3895_C|T, 4607_A|G, 4731_G|A, 4784_G|A, 5087_T|C, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6725_T|C, 6737_C|T, 6983_A|G, 7223_A|G, 7307_T|C, 7451_A|C, 7633_T|C,
7667_T|C, 7805_T|C, 8480_A|G, 9240_C|T, 9246_C|T, 9305_C|T, 9353_T|C, 10561_T|C
Case 4 (A.1): PP626400.1
| Target: 995 samples | Number of changes: 173 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 16-17, 169-170 | BC BR coord: 1240 - 1241, 10391 - 10392 |
| Direction L1: << | Initial region span: 1-7,123-169,170-173 | Gap history (edge excluded): 7-170 -> 7-123 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.22e-253 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.13e+04 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
7 |
1.128689 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
123 |
3.313539 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
169 |
-10.000000 |
-584.686256 |
1541.372512 |
3.218864e-253 |
|
|
|
| A.1.NmC2 |
0 |
169 |
-10.000000 |
-1272.796736 |
2917.593472 |
0.000000e+00 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
170 |
1.925944 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
123 |
1.574285 |
-6.660691 |
57.321382 |
0.367879 |
* |
|
|
|
Target sequence
, 254_A|G, 423_G|A, 434_T|C, 437_C|T, 467_T|C, 523_A|G, 558_T|C, 575_T|C, 653_G|A, 719_T|C, 786_C|T, 803_A|G, 884_A|G, 962_T|C, 1133_C|T, 1175_A|G, 1263_T|C, 1325_C|T, 1436_T|C, 1466_T|C,
1616_C|T, 1688_C|T, 1718_C|T, 1739_T|G, 1896_T|C, 1922_C|T, 2060_T|A, 2066_C|T, 2132_T|C, 2207_A|G, 2375_C|T, 2394_A|T, 2411_C|T, 2448_T|C, 2460_T|C, 2471_A|G, 2492_T|C, 2519_G|A, 2525_G|A,
2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2799_T|C, 2804_C|T, 2846_G|A, 2925_G|A, 2960_T|C, 2973_G|A, 3002_T|C, 3038_T|C, 3059_G|A, 3086_C|T, 3110_T|C, 3127_A|G, 3137_T|C,
3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3308_T|C, 3332_G|A, 3344_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3884_TT|CC, 3989_T|C, 4017_C|T, 4085_T|C, 4238_C|T, 4277_T|G, 4295_A|G,
4298_T|C, 4379_C|T, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4652_A|G, 4733_T|C, 4844_G|C, 4850_C|T, 4887_C|T, 4889_C|T, 4952_C|T, 5000_T|C, 5060_T|C, 5081_C|A, 5177_G|A, 5198_T|C, 5267_T|C,
5369_C|T, 5375_A|G, 5387_C|T, 5501_A|G, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C, 5906_G|A, 5937_T|C, 5987_G|T, 6056_C|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|C, 6363_C|T, 6413_T|C, 6473_T|A,
6684_A|C, 6807_T|C, 6890_A|G, 6909_A|G, 6911_C|T, 6983_A|G, 7050_T|C, 7064_T|C, 7079_A|G, 7313_T|A, 7355_T|C, 7358_T|C, 7367_A|G, 7451_A|C, 7506_C|T, 7517_C|T, 7633_T|C, 7637_A|G, 7739_C|T,
7805_T|C, 7898_C|T, 8006_CG|TA, 8183_T|G, 8408_T|C, 8516_A|G, 8525_C|T, 8606_C|T, 8651_CC|TT, 8753_T|A, 8969_T|C, 9017_T|C, 9098_T|C, 9113_T|C, 9206_A|G, 9222_G|A, 9305_C|T, 9353_T|C,
9366_T|C, 9434_A|G, 9455_G|A, 9473_G|A, 9509_T|C, 9527_A|G, 9582_C|T, 9591_T|C, 9620_C|T, 9623_C|T, 9806_C|T, 9863_C|T, 9926_T|C, 10079_A|G, 10161_G|A, 10262_T|C, 10376_G|A, 10392_A|G,
10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): MW122450.1
| Target: 995 samples | Number of changes: 54 | |
| BC: A.1 + A.1 | BC BR: 49-50 | BC BR coord: 9751 - 9752 |
| Direction L1: >> | Initial region span: 1-46,50-54 | Gap history (edge excluded): 46-50 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.07e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
46 |
5.322527 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
50 |
0.474372 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 1380_C|T, 1616_C|T, 1904_C|T, 2093_T|C, 2375_C|T, 2555_T|C, 2681_G|A, 2724_T|C, 2788_G|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T,
3863_G|A, 4536_A|G, 4556_A|T, 4697_T|C, 4706_A|G, 4784_G|A, 5195_G|A, 5315_A|G, 5597_C|T, 5937_T|C, 5966_C|T, 6029_G|A, 6299_C|T, 6327_A|C, 6725_T|C, 6737_C|T, 6755_C|T, 6779_T|C, 6983_A|G,
7451_A|C, 7505_C|T, 7541_C|A, 7633_T|C, 7689_C|T, 7805_T|C, 8690_A|G, 9240_C|T, 9305_C|T, 9353_T|C, 9728_A|G, 9896_T|C, 10052_T|C, 10188_T|C, 10273_T|C, 10307_A|G
Case 4 (A.1): OP858751.1
| Target: 995 samples | Number of changes: 40 | |
| BC: A.1 + A.1 | BC BR: 20-21 | BC BR coord: 3898 - 3899 |
| Direction L1: << | Initial region span: 1-18,21-40 | Gap history (edge excluded): 18-21 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.30e-08 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
18 |
1.293618 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
21 |
2.809125 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 734_A|G, 1124_A|G, 1298_T|C, 1616_C|T, 1644_T|C, 2375_C|T, 2788_G|C, 2918_C|T, 2925_G|A, 3059_G|A, 3131_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3534_G|A, 3617_G|A, 3731_C|T,
3752_C|T, 4469_T|C, 4784_G|A, 5195_G|A, 5315_A|G, 5937_T|C, 6327_A|C, 6429_C|T, 6725_T|C, 6737_C|T, 6983_A|G, 7633_T|C, 7805_T|C, 7925_C|T, 8177_T|C, 8663_C|A, 9240_C|T, 9305_C|T, 9353_T|C,
9362_G|A, 10561_T|C
Case 4 (A.1): MT377493.2
| Target: 995 samples | Number of changes: 173 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 16-17, 169-170 | BC BR coord: 1240 - 1241, 10391 - 10392 |
| Direction L1: << | Initial region span: 1-7,123-169,170-173 | Gap history (edge excluded): 7-170 -> 7-123 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.22e-253 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.13e+04 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
7 |
1.128689 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
123 |
3.313539 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
169 |
-10.000000 |
-584.686256 |
1541.372512 |
3.218864e-253 |
|
|
|
| A.1.NmC2 |
0 |
169 |
-10.000000 |
-1272.796736 |
2917.593472 |
0.000000e+00 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
170 |
1.925944 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
123 |
1.574285 |
-6.660691 |
57.321382 |
0.367879 |
* |
|
|
|
Target sequence
, 254_A|G, 423_G|A, 434_T|C, 437_C|T, 467_T|C, 523_A|G, 558_T|C, 575_T|C, 653_G|A, 719_T|C, 786_C|T, 803_A|G, 884_A|G, 962_T|C, 1133_C|T, 1175_A|G, 1263_T|C, 1325_C|T, 1436_T|C, 1466_T|C,
1616_C|T, 1688_C|T, 1718_C|T, 1739_T|G, 1896_T|C, 1922_C|T, 2060_T|A, 2066_C|T, 2132_T|C, 2207_A|G, 2375_C|T, 2394_A|T, 2411_C|T, 2448_T|C, 2460_T|C, 2471_A|G, 2492_T|C, 2519_G|A, 2525_G|A,
2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2799_T|C, 2804_C|T, 2846_G|A, 2925_G|A, 2960_T|C, 2973_G|A, 3002_T|C, 3038_T|C, 3059_G|A, 3086_C|T, 3110_T|C, 3127_A|G, 3137_T|C,
3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3308_T|C, 3332_G|A, 3344_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3884_TT|CC, 3989_T|C, 4017_C|T, 4085_T|C, 4238_C|T, 4277_T|G, 4295_A|G,
4298_T|C, 4379_C|T, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4652_A|G, 4733_T|C, 4844_G|C, 4850_C|T, 4887_C|T, 4889_C|T, 4952_C|T, 5000_T|C, 5060_T|C, 5081_C|A, 5177_G|A, 5198_T|C, 5267_T|C,
5369_C|T, 5375_A|G, 5387_C|T, 5501_A|G, 5546_T|C, 5591_T|C, 5744_A|G, 5828_T|C, 5906_G|A, 5937_T|C, 5987_G|T, 6056_C|T, 6101_T|C, 6155_A|G, 6164_C|T, 6275_A|C, 6363_C|T, 6413_T|C, 6473_T|A,
6684_A|C, 6807_T|C, 6890_A|G, 6909_A|G, 6911_C|T, 6983_A|G, 7050_T|C, 7064_T|C, 7079_A|G, 7313_T|A, 7355_T|C, 7358_T|C, 7367_A|G, 7451_A|C, 7506_C|T, 7517_C|T, 7633_T|C, 7637_A|G, 7739_C|T,
7805_T|C, 7898_C|T, 8006_CG|TA, 8183_T|G, 8408_T|C, 8516_A|G, 8525_C|T, 8606_C|T, 8651_CC|TT, 8753_T|A, 8969_T|C, 9017_T|C, 9098_T|C, 9113_T|C, 9206_A|G, 9222_G|A, 9305_C|T, 9353_T|C,
9366_T|C, 9434_A|G, 9455_G|A, 9473_G|A, 9509_T|C, 9527_A|G, 9582_C|T, 9591_T|C, 9620_C|T, 9623_C|T, 9806_C|T, 9863_C|T, 9926_T|C, 10079_A|G, 10161_G|A, 10262_T|C, 10376_G|A, 10392_A|G,
10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): MK829152.1
| Target: 995 samples | Number of changes: 30 | |
| BC: A.1 + A.1 | BC BR: 7-8 | BC BR coord: 2723 - 2724 |
| Direction L1: << | Initial region span: 1-4,14-30 | Gap history (edge excluded): 4-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.09e-09 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.686929 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
14 |
1.615582 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 510_T|C, 647_G|A, 1418_G|A, 1616_C|T, 2117_A|G, 2225_A|G, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3428_C|T, 3731_C|T, 5937_T|C, 6896_T|C, 6930_T|C, 7242_A|G,
7451_A|C, 7478_C|T, 7596_A|C, 7633_T|C, 7805_T|C, 7877_C|T, 7922_G|A, 8024_T|C, 9305_C|T, 9334_A|G, 9353_T|C
Case 4 (A.1): MT078742.1
| Target: 995 samples | Number of changes: 36 | |
| BC: A.1 + A.1 | BC BR: 4-5 | BC BR coord: 1397 - 1398 |
| Direction L1: << | Initial region span: 1-4,19-36 | Gap history (edge excluded): 4-19 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.69e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
4 |
0.939106 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
19 |
2.379888 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 419_A|G, 467_T|C, 1044_G|A, 1313_C|T, 1616_C|T, 2375_C|T, 2681_G|A, 2724_T|C, 2853_T|C, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3987_G|A,
4193_A|G, 4367_T|C, 5676_C|T, 5937_T|C, 6958_A|G, 6983_A|G, 6992_A|G, 7229_A|G, 7442_A|G, 7451_A|C, 7633_T|C, 7805_T|C, 8762_A|G, 8777_C|T, 9305_C|T, 9353_T|C, 9557_T|C
Case 4 (A.1): MH063259.1
| Target: 995 samples | Number of changes: 36 | |
| BC: A.1 + A.1 | BC BR: 7-8 | BC BR coord: 2798 - 2799 |
| Direction L1: << | Initial region span: 1-7,15-36 | Gap history (edge excluded): 7-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.99e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
7 |
0.588154 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
15 |
2.721124 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 734_A|G, 1616_C|T, 2375_C|T, 2669_T|C, 2681_G|A, 2788_G|C, 2925_G|A, 3059_G|A, 3070_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3470_T|C, 3505_A|G, 3534_G|A, 3731_C|T, 3863_G|A,
4161_G|A, 5195_G|A, 5315_A|G, 5840_T|C, 6429_C|T, 6725_T|C, 6737_C|T, 6983_A|G, 7451_A|C, 7633_T|C, 7925_C|T, 9240_C|T, 9344_G|A, 9353_T|C, 9635_G|T, 10127_T|G, 10301_T|G
Case 4 (A.1): MH063263.1
| Target: 995 samples | Number of changes: 47 | |
| BC: A.1 + A.1 | BC BR: 39-40 | BC BR coord: 7516 - 7517 |
| Direction L1: >> | Initial region span: 1-36,42-47 | Gap history (edge excluded): 36-42 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.33e-07 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
36 |
2.817295 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
42 |
0.257366 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 734_A|G, 825_T|C, 1616_C|T, 2375_C|T, 2669_T|C, 2681_G|A, 2724_T|C, 2729_A|G, 2788_G|C, 2918_C|T, 2925_G|A, 3059_G|A, 3070_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A, 3470_T|C,
3534_G|A, 3617_G|A, 3731_C|T, 3863_G|A, 4161_G|A, 4470_G|T, 4523_G|T, 4784_G|A, 4790_A|G, 5195_G|A, 5315_A|G, 5424_C|T, 5937_T|C, 6327_A|C, 6429_C|T, 6725_T|C, 6737_C|T, 6983_A|G, 7050_T|C,
7451_A|C, 7633_T|C, 7805_T|C, 7853_G|A, 7925_C|T, 8237_T|C, 9344_G|A, 9353_T|C, 9778_A|G
Case 4 (A.1): MK829154.1
| Target: 995 samples | Number of changes: 42 | |
| BC: A.1 + A.1 | BC BR: 26-27 | BC BR coord: 5936 - 5937 |
| Direction L1: >> | Initial region span: 1-20,34-42 | Gap history (edge excluded): 20-34 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.36e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
20 |
1.680559 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
34 |
1.542976 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 485_T|C, 569_T|C, 791_A|G, 1616_C|T, 1883_C|T, 2060_T|C, 2225_A|G, 2285_C|A, 2375_C|T, 2681_G|A, 2724_T|C, 2840_T|A, 2925_G|A, 3059_G|A, 3140_A|G, 3186_G|A, 3218_T|A, 3332_G|A,
3428_C|T, 3722_T|C, 3731_C|T, 4128_T|C, 4730_A|G, 4919_C|T, 5330_T|C, 6930_T|C, 7242_A|G, 7451_A|C, 7478_C|T, 7633_T|C, 7805_T|C, 8249_C|T, 8648_G|A, 8867_C|T, 8897_A|G, 9219_T|C, 9305_C|T,
9334_A|G, 9353_T|C, 9929_T|C, 10139_C|G
Case 4 (A.1): OQ661918.1
| Target: 995 samples | Number of changes: 173 | |
| BC: A.1 + A.1.NmC1 | BC BR: 167-168 | BC BR coord: 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-55,171-173 | Gap history (edge excluded): 55-171 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.14e-02 | |
| Rec. model vs L1: 1.88e+14 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
55 |
2.650942 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
171 |
1.972602 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
155 |
1.306556 |
-1.268593 |
16.537187 |
1.328857e+08 |
* |
|
|
|
Target sequence
, 212_C|T, 254_A|G, 423_G|A, 467_T|C, 523_A|G, 558_T|C, 575_T|C, 653_G|A, 719_T|C, 800_G|A, 803_A|G, 884_A|G, 1031_G|T, 1175_A|G, 1325_C|T, 1370_G|A, 1388_C|T, 1598_T|C, 1611_T|C, 1616_C|T,
1718_C|T, 1784_T|C, 1814_T|C, 1875_T|C, 1896_T|C, 1922_C|T, 2060_T|A, 2066_C|T, 2132_T|C, 2207_A|G, 2233_A|G, 2279_T|C, 2375_C|T, 2394_A|T, 2411_C|T, 2435_T|C, 2460_T|C, 2492_T|C, 2519_G|A,
2525_G|A, 2576_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2804_C|T, 2846_G|A, 2925_G|A, 2960_T|C, 2973_G|A, 3002_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A,
3203_G|A, 3218_T|A, 3254_T|C, 3266_C|T, 3290_A|T, 3308_T|C, 3332_G|A, 3344_C|T, 3491_G|A, 3500_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3885_T|C, 3917_C|A, 3945_T|C, 3989_T|C, 4085_T|C, 4238_C|T,
4295_A|G, 4415_T|C, 4454_G|A, 4493_C|T, 4523_G|A, 4595_C|T, 4607_A|G, 4652_A|G, 4733_T|C, 4781_C|T, 4817_C|T, 4889_C|T, 4952_C|T, 5000_T|C, 5060_T|C, 5195_G|A, 5198_T|C, 5362_T|C, 5369_C|T,
5375_A|G, 5387_C|T, 5501_A|G, 5546_T|C, 5591_T|C, 5744_A|G, 5810_A|G, 5828_T|C, 5937_T|C, 5987_G|C, 6056_C|T, 6083_A|T, 6101_T|C, 6152_C|T, 6155_A|G, 6164_C|T, 6275_A|C, 6359_C|T, 6363_C|T,
6473_T|A, 6684_A|C, 6785_T|C, 6807_T|C, 6890_A|G, 6983_A|G, 7037_C|T, 7050_T|C, 7064_T|C, 7079_A|G, 7085_A|C, 7358_T|C, 7367_A|G, 7451_A|C, 7517_C|T, 7633_T|C, 7637_A|G, 7739_C|T, 7805_T|C,
7898_C|T, 8007_G|A, 8105_C|T, 8126_T|C, 8402_C|T, 8408_T|C, 8516_A|G, 8555_C|T, 8606_C|T, 8618_A|G, 8651_C|T, 8933_T|C, 9017_T|C, 9098_T|C, 9206_A|G, 9222_G|A, 9305_C|T, 9353_T|C, 9434_A|G,
9455_G|A, 9473_G|A, 9503_C|T, 9509_T|C, 9527_A|G, 9545_G|A, 9582_C|T, 9591_T|C, 9620_C|T, 9623_C|T, 9682_T|C, 9806_C|T, 9926_T|C, 10161_G|A, 10376_G|A, 10392_A|G, 10409_A|G, 10477_T|C,
10561_T|C, 10613_C|T
Case 4 (A.1): MK238035.1
| Target: 995 samples | Number of changes: 151 | |
| BC: A.1 + A.1.NmC1 | BC BR: 145-146 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-6,149-151 | Gap history (edge excluded): 6-149 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.07e+20 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.085531 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
149 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
113 |
0.536540 |
-1.235803 |
16.471607 |
6.797562e+11 |
* |
|
|
|
Target sequence
, 188_T|C, 254_A|G, 290_A|G, 299_T|C, 423_G|A, 432_A|G, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G, 1559_A|G, 1568_C|T, 1616_C|T,
1787_T|C, 1815_G|A, 1854_C|T, 2066_C|T, 2375_C|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2795_G|A, 2879_T|C, 2925_G|A, 2949_C|A,
2969_C|T, 2984_T|C, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3248_T|C, 3254_T|C, 3332_G|A, 3335_C|T, 3518_C|T, 3534_G|A, 3566_T|C, 3596_G|A,
3671_A|G, 3722_T|C, 3731_C|T, 3836_T|C, 3857_C|T, 3881_T|C, 3989_T|C, 4070_T|C, 4085_T|C, 4106_A|G, 4220_G|A, 4322_C|T, 4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4652_A|G,
4916_C|T, 4925_G|A, 4934_G|A, 5000_T|C, 5030_C|T, 5060_T|C, 5096_T|C, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5421_C|T, 5459_T|C, 5555_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5798_C|T, 5828_T|C,
5937_T|C, 6020_T|C, 6056_C|T, 6122_C|T, 6143_T|C, 6545_C|T, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6983_A|G, 7050_T|C, 7223_A|G, 7316_T|C, 7451_A|C, 7517_C|T, 7568_T|C, 7592_T|C, 7598_G|A,
7633_T|C, 7637_A|G, 7646_C|T, 7880_G|A, 7887_T|C, 7895_G|A, 7964_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8303_C|T, 8467_T|C, 8474_C|T, 8591_A|G, 8606_C|T, 8631_A|G, 8780_T|C, 9011_C|T,
9017_T|C, 9080_C|A, 9239_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9539_T|C, 9614_G|A, 10146_G|A, 10322_C|T, 10335_G|A, 10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): MK238037.1
| Target: 995 samples | Number of changes: 152 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 5-6, 9-10 | BC BR coord: 427 - 428, 754 - 755 |
| Direction L1: << | Initial region span: 1-5,6-8,113-152 | Gap history (edge excluded): 5-113 -> 8-113 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.39e-02 | |
| Rec. model vs L1: 1.38e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.8502 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
8 |
4.667316 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
6 |
0.000000 |
-2.560621 |
15.121243 |
5.117957e-03 |
* |
|
|
| A.1.NmC2 |
0 |
6 |
-2.355267 |
-42.355267 |
94.710534 |
2.668995e-20 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
113 |
1.287263 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 188_T|C, 254_A|G, 290_A|G, 299_T|C, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G, 1559_A|G, 1568_C|T, 1616_C|T, 1787_T|C,
1815_G|A, 2066_C|T, 2375_C|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T, 2654_C|T, 2681_G|A, 2700_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2795_G|A, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T,
2984_T|C, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3518_C|T, 3534_G|A, 3566_T|C, 3596_G|A, 3671_A|G, 3731_C|T, 3836_T|C,
3857_C|T, 3881_T|C, 3989_T|C, 4070_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4220_G|A, 4322_C|T, 4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 5000_T|C, 5030_C|T,
5060_T|C, 5096_T|C, 5277_T|C, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5421_C|T, 5459_T|C, 5519_A|C, 5555_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5798_C|T, 5828_T|C, 5937_T|C, 6020_T|C, 6056_C|T,
6143_T|C, 6545_C|T, 6626_C|T, 6642_T|C, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6908_T|A, 6983_A|G, 7046_T|G, 7050_T|C, 7316_T|C, 7451_A|C, 7502_G|A, 7517_C|T, 7568_T|C, 7598_G|A, 7633_T|C,
7637_A|G, 7646_C|T, 7808_T|C, 7880_G|A, 7887_T|C, 7895_G|A, 7964_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8303_C|T, 8408_T|C, 8467_T|C, 8474_C|T, 8510_C|T, 8591_A|G, 8606_C|T, 8631_A|G,
8780_T|C, 9011_C|T, 9017_T|C, 9239_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9539_T|C, 9591_T|C, 9614_G|A, 10193_A|G, 10322_C|T, 10335_G|A, 10376_G|A, 10392_A|G, 10561_T|C
Case 4 (A.1): MK238039.1
| Target: 995 samples | Number of changes: 91 | |
| BC: A.1 + A.1 | BC BR: 71-72 | BC BR coord: 7450 - 7451 |
| Direction L1: >> | Initial region span: 1-27,87-91 | Gap history (edge excluded): 27-87 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.24e-23 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
27 |
0.820835 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
87 |
0.231162 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G, 1559_A|G, 1568_C|T, 1616_C|T, 2066_C|T, 2375_C|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T, 2654_C|T,
2681_G|A, 2700_G|A, 2724_T|C, 2739_G|A, 2742_C|A, 2774_C|T, 2795_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3518_C|T, 3534_G|A, 3671_A|G, 3731_C|T,
3836_T|C, 3857_C|T, 3881_T|C, 3989_T|C, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4934_G|A, 5000_T|C, 5030_C|T, 5060_T|C, 5277_T|C, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5421_C|T,
5459_T|C, 5642_A|G, 5717_C|T, 5798_C|T, 5828_T|C, 5937_T|C, 6020_T|C, 6056_C|T, 6143_T|C, 6807_T|C, 6827_T|A, 6839_G|A, 7046_T|G, 7050_T|C, 7502_G|A, 7517_C|T, 7568_T|C, 7598_G|A, 7633_T|C,
7637_A|G, 7646_C|T, 8780_T|C, 9239_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9591_T|C, 9614_G|A, 10245_A|T, 10322_C|T, 10335_G|A, 10376_G|A, 10392_A|G
Case 4 (A.1): MK238038.1
| Target: 995 samples | Number of changes: 146 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 5-6, 9-10 | BC BR coord: 427 - 428, 754 - 755 |
| Direction L1: << | Initial region span: 1-5,6-8,111-146 | Gap history (edge excluded): 5-111 -> 8-111 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.79e-01 | |
| Rec. model vs L1: 1.39e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
1.123655 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
8 |
4.667316 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
6 |
0.000000 |
-2.560621 |
15.121243 |
5.117957e-03 |
* |
|
|
| A.1.NmC2 |
0 |
6 |
-2.355267 |
-42.355267 |
94.710534 |
2.668995e-20 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
111 |
2.09327 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 188_T|C, 290_A|G, 299_T|C, 333_G|A, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G, 1559_A|G, 1568_C|T, 1616_C|T, 1787_T|C,
1815_G|A, 2066_C|T, 2375_C|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T, 2654_C|T, 2681_G|A, 2700_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2795_G|A, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T,
2984_T|C, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3518_C|T, 3534_G|A, 3566_T|C, 3596_G|A, 3671_A|G, 3731_C|T, 3836_T|C,
3857_C|T, 3881_T|C, 3989_T|C, 4070_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4220_G|A, 4322_C|T, 4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 5000_T|C, 5030_C|T,
5060_T|C, 5096_T|C, 5277_T|C, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5421_C|T, 5459_T|C, 5486_T|C, 5555_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5798_C|T, 5828_T|C, 5937_T|C, 5967_A|G, 6020_T|C,
6056_C|T, 6143_T|C, 6545_C|T, 6642_T|C, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6908_T|A, 6983_A|G, 7046_T|G, 7050_T|C, 7451_A|C, 7517_C|T, 7568_T|C, 7598_G|A, 7633_T|C, 7637_A|G, 7646_C|T,
7880_G|A, 7887_T|C, 7895_G|A, 7964_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8303_C|T, 8467_T|C, 8474_C|T, 8510_C|T, 8591_A|G, 8606_C|T, 8631_A|G, 8780_T|C, 9011_C|T, 9017_T|C, 9239_T|C,
9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9539_T|C, 10193_A|G, 10322_C|T, 10335_G|A, 10376_G|A, 10392_A|G, 10561_T|C
Case 4 (A.1): MN611472.1
| Target: 995 samples | Number of changes: 107 | |
| BC: A.1.NmC1 + A.1 | BC BR: 6-7 | BC BR coord: 754 - 755 |
| Direction L1: << | Initial region span: 1-6,104-107 | Gap history (edge excluded): 6-104 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.37e+06 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
6 |
-8.607189 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
104 |
0.908531 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 188_T|C, 254_A|G, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 878_C|T, 1067_T|C, 1073_C|T, 1175_A|G, 1196_C|T, 1616_C|T, 1728_A|C, 1799_G|A, 2210_T|C, 2375_C|T, 2471_A|G, 2540_A|G, 2552_C|T,
2615_G|A, 2654_C|T, 2681_G|A, 2724_T|C, 2750_G|A, 2925_G|A, 3059_G|A, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3464_T|A, 3518_C|T, 3534_G|A, 3731_C|T,
3932_C|T, 4005_A|G, 4013_T|C, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A, 4454_G|A, 4547_C|T, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C, 5249_C|T, 5327_G|A, 5357_C|T, 5375_A|G,
5390_CT|TC, 5420_T|C, 5585_C|T, 5591_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6140_A|G, 6254_T|C, 6363_C|T, 6674_C|T, 6983_A|G, 6992_A|G, 7014_C|T, 7322_G|A, 7451_A|C, 7517_C|T, 7530_T|C, 7633_T|C,
7646_C|T, 7730_C|T, 7805_T|C, 7961_A|G, 8007_G|A, 8082_C|T, 8144_A|T, 8186_A|G, 8199_G|T, 8222_C|T, 8303_C|T, 8353_C|T, 8369_C|T, 8408_T|C, 8702_C|T, 8914_A|G, 8969_T|C, 9017_T|C, 9041_A|G,
9305_C|T, 9353_T|C, 9434_A|G, 9722_T|C, 9854_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T, 10647_T|C, 10649_T|C, 10652_AG|GA
Case 4 (A.1): EU545988.1
| Target: 995 samples | Number of changes: 205 | |
| BC: A.1 + A.1 | BC BR: 136-137 | BC BR coord: 6580 - 6581 |
| Direction L1: << | Initial region span: 1-8,141-205 | Gap history (edge excluded): 8-141 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.86e-16 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
8 |
1.46353 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
141 |
5.424392 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 117_.|C, 122_A|G, 138, 254_A|G, 257_T|A, 423_G|A, 467_T|C, 475_C|T, 523_A|G, 558_T|C, 569_T|C, 578_T|C, 639_C|T, 653_G|A, 689_G|A, 719_T|C, 803_A|G, 827_C|T, 837_T|C, 902_T|C, 917_C|T,
1070_C|T, 1095_A|G, 1154_C|T, 1175_A|G, 1232_A|G, 1505_C|T, 1616_C|T, 1655_C|T, 1682_C|T, 1701_C|T, 1991_T|C, 2049_T|C, 2066_C|T, 2171_C|T, 2267_C|T, 2285_C|T, 2375_C|T, 2394_A|G, 2411_C|T,
2437_T|C, 2468_C|T, 2525_G|A, 2540_A|G, 2567_A|T, 2606_C|T, 2615_G|A, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3052_T|C, 3059_G|A, 3071_A|G, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A,
3218_T|A, 3254_T|C, 3275_C|T, 3332_G|A, 3434_G|A, 3518_C|T, 3534_G|A, 3710_T|C, 3731_C|T, 3740_C|T, 3806_A|T, 3854_A|G, 3870_T|C, 3875_C|T, 3885_T|C, 3989_T|C, 4011_G|A, 4016_T|G, 4040_A|G,
4085_T|C, 4091_C|T, 4106_A|G, 4109_A|G, 4128_T|C, 4146_C|T, 4154_A|C, 4238_C|T, 4259_C|T, 4271_A|G, 4277_T|C, 4295_A|G, 4454_G|A, 4457_A|G, 4481_G|A, 4493_C|T, 4523_G|A, 4592_A|G, 4595_C|T,
4706_A|T, 4733_T|C, 4751_T|C, 4850_C|T, 4859_A|G, 4871_T|C, 4948_T|C, 4988_G|A, 4995_C|T, 5000_T|C, 5060_T|C, 5066_C|T, 5081_C|A, 5163_C|T, 5193_T|C, 5369_C|T, 5375_A|G, 5384_C|T, 5387_C|T,
5429_G|A, 5468_T|C, 5546_T|C, 5567_G|C, 5591_T|C, 5800_A|T, 5811_C|A, 5828_T|C, 5937_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6292_G|A, 6363_C|T, 6389_G|A, 6443_G|A, 6473_T|C, 6501_C|T,
6506_A|G, 6588_A|G, 6618_C|T, 6629_T|C, 6684_A|C, 6689_C|T, 6698_A|C, 6746_C|T, 6882_G|A, 6890_A|G, 6902_C|T, 6923_C|T, 6935_G|A, 6983_A|G, 7037_C|T, 7049_CT|TC, 7064_T|C, 7085_A|G, 7157_C|T,
7208_A|G, 7405_C|A, 7408_A|G, 7451_A|C, 7517_C|T, 7568_T|C, 7633_T|C, 7679_A|G, 7713_T|C, 7733_G|A, 7805_T|C, 7817_G|A, 7853_G|T, 7869_C|A, 7871_G|A, 8007_G|A, 8093_G|T, 8105_C|T, 8162_C|T,
8408_T|C, 8450_T|C, 8516_A|G, 8606_C|T, 8813_G|A, 9011_C|T, 9017_T|C, 9119_T|C, 9122_A|G, 9176_C|T, 9266_A|T, 9275_T|A, 9305_C|T, 9353_T|C, 9413_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9509_T|C,
9518_A|G, 9527_A|G, 9677_G|A, 9734_T|C, 9779_C|T, 9884_G|A, 9896_T|A, 10244_C|T, 10262_T|C, 10281_G|A, 10361_T|C, 10367_T|C, 10374_C|T
Case 4 (A.1): KU955593.1
| Target: 995 samples | Number of changes: 176 | |
| BC: A.1 + A.1.NmC1 | BC BR: 172-173 | BC BR coord: 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-172,173-176 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.96e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
172 |
3.70039 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
173 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 122_A|G, 254_A|G, 359_C|T, 423_G|A, 467_T|C, 475_C|T, 496_G|A, 523_A|G, 558_T|A, 653_G|A, 719_T|C, 803_A|G, 837_T|C, 1070_C|T, 1175_A|G, 1337_A|T, 1343_C|T, 1442_C|T, 1616_C|T, 1655_C|T,
1736_A|G, 1922_C|T, 2066_C|T, 2093_T|C, 2111_T|G, 2156_G|A, 2282_A|G, 2285_C|T, 2298_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2570_C|T, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C,
2828_C|T, 2864_A|G, 2925_G|A, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3296_C|T, 3332_G|A, 3473_C|T, 3518_C|T,
3534_G|A, 3605_G|A, 3617_G|A, 3731_C|T, 3767_A|T, 3806_A|T, 3827_C|T, 3854_A|G, 3885_T|C, 3928_T|C, 3989_T|C, 4085_T|C, 4094_C|T, 4106_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T,
4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5036_C|T, 5060_T|C, 5066_C|T, 5096_T|C, 5267_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5717_C|T,
5828_T|C, 5937_T|C, 6002_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_C|T, 6443_G|A, 6473_T|C, 6512_C|T, 6533_A|G, 6584_T|C, 6608_G|A, 6626_C|T, 6629_T|C, 6684_A|C, 6746_C|T, 6890_A|G,
6983_A|G, 6989_C|T, 7037_C|T, 7049_CT|TC, 7148_T|C, 7157_C|T, 7175_C|T, 7451_A|T, 7493_G|T, 7517_C|T, 7538_A|G, 7568_T|C, 7577_T|C, 7604_T|C, 7633_T|C, 7679_A|G, 7713_T|C, 7805_T|C, 7826_T|C,
7869_C|A, 7937_C|T, 8007_G|A, 8105_C|T, 8387_C|T, 8408_T|C, 8429_G|A, 8516_A|G, 8597_T|C, 8823_C|T, 8888_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9200_G|A, 9225_C|T, 9272_C|T, 9305_C|T, 9353_T|C,
9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9677_G|A, 9704_C|T, 9758_A|G, 9884_G|A, 9887_C|T, 9896_T|A, 9899_A|G, 10217_A|G, 10281_G|A, 10286_C|T, 10314_A|G, 10349_T|C, 10361_T|C,
10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): KX377336.1
| Target: 995 samples | Number of changes: 469 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 463-464, 466-467 | BC BR coord: 10391 - 10392, 10611 - 10612 |
| Direction L1: >> | Initial region span: 1-463,464-466,467-469 | Gap history (edge excluded): 463-467 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.70e-03 | |
| Rec. model vs L1: 1.28e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
463 |
49.059057 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
466 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
464 |
-0.710160 |
-1.941794 |
9.883589 |
4.700906e-03 |
* |
|
|
| A.1.NmC2 |
0 |
464 |
-10.000000 |
-19.755055 |
45.510109 |
8.614407e-11 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
467 |
0.705991 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 206_G|A, 212_C|T, 233_G|A, 254_A|G, 257_T|A, 266_T|C, 320_A|C, 419_A|T, 428_T|C, 431_T|C, 467_T|C, 475_C|T, 485_T|C, 515_G|A, 523_A|G, 534_G|A, 558_T|C, 564_A|G, 578_T|C, 617_C|A, 639_C|T,
653_G|A, 674_T|C, 689_G|A, 692_A|G, 734_A|G, 770_C|T, 803_A|G, 842_T|C, 878_C|T, 884_A|G, 899_C|T, 957_C|T, 977_C|T, 1007_C|T, 1034_T|C, 1070_C|T, 1091_A|G, 1094_G|A, 1100_C|T, 1103_C|T,
1110_C|T, 1115_T|C, 1124_A|G, 1127_C|T, 1160_T|C, 1175_A|G, 1232_A|G, 1250_C|T, 1277_C|T, 1298_T|C, 1328_T|C, 1355_C|T, 1379_T|C, 1433_C|T, 1444_C|T, 1520_G|A, 1607_C|T, 1616_C|G, 1634_C|T,
1644_T|C, 1655_C|T, 1682_C|T, 1701_C|T, 1769_A|C, 1781_C|T, 1793_T|C, 1854_C|T, 1865_T|C, 1898_G|A, 1907_A|G, 1940_A|G, 1946_C|T, 1973_C|T, 1991_T|C, 2021_C|T, 2066_C|T, 2069_A|G, 2090_C|T,
2093_T|A, 2103_C|T, 2114_T|C, 2129_C|T, 2150_C|T, 2156_G|T, 2198_T|C, 2228_T|C, 2279_T|C, 2285_C|T, 2381_T|A, 2394_A|G, 2437_T|C, 2469_T|C, 2474_C|T, 2501_C|T, 2525_G|A, 2540_A|G, 2606_C|T,
2633_A|G, 2648_T|G, 2654_C|T, 2681_G|A, 2687_C|T, 2723_CT|TC, 2792_A|G, 2798_A|G, 2804_C|T, 2816_C|T, 2831_C|T, 2840_T|C, 2858_C|T, 2864_A|G, 2876_A|C, 2879_T|C, 2891_C|T, 2921_A|G, 2925_G|A,
2930_T|C, 2963_T|C, 2996_C|T, 2999_G|A, 3002_T|C, 3008_A|G, 3014_T|C, 3038_T|C, 3041_T|A, 3052_T|C, 3059_G|A, 3068_T|C, 3071_A|G, 3104_G|A, 3110_T|C, 3134_C|T, 3137_T|C, 3140_A|G, 3180_T|C,
3186_G|A, 3203_G|A, 3218_T|A, 3221_C|T, 3248_T|C, 3254_T|C, 3275_C|T, 3279_A|G, 3290_A|G, 3296_C|T, 3314_T|C, 3329_C|T, 3332_G|A, 3338_T|C, 3368_A|G, 3377_A|G, 3380_T|C, 3434_G|A, 3450_C|T,
3464_T|A, 3506_A|G, 3515_A|G, 3518_C|T, 3522_T|C, 3534_G|A, 3666_C|T, 3705_C|T, 3723_T|C, 3731_C|T, 3806_A|C, 3818_A|C, 3836_T|C, 3854_A|G, 3881_T|C, 3885_T|C, 3895_C|T, 3906_T|C, 3973_T|C,
3989_T|C, 4034_G|A, 4049_G|A, 4076_C|T, 4085_T|C, 4106_A|G, 4112_C|T, 4128_T|C, 4146_C|T, 4172_C|T, 4238_C|T, 4268_C|T, 4272_T|C, 4277_T|C, 4292_G|A, 4322_C|T, 4325_G|A, 4328_C|T, 4331_T|C,
4343_C|T, 4424_C|T, 4436_T|C, 4454_G|A, 4493_C|T, 4589_C|T, 4592_A|G, 4595_C|T, 4610_A|G, 4682_C|T, 4688_A|G, 4697_T|C, 4733_T|C, 4751_T|C, 4790_A|G, 4829_C|T, 4856_T|C, 4859_A|G, 4877_C|T,
4886_G|A, 4904_C|T, 4961_T|C, 4982_T|C, 4988_G|A, 4994_G|T, 5000_T|C, 5027_A|G, 5060_T|C, 5090_G|A, 5144_G|A, 5153_G|A, 5189_A|G, 5192_CT|TC, 5267_T|C, 5270_T|G, 5277_T|C, 5279_A|G, 5342_T|C,
5357_C|T, 5375_A|G, 5387_C|T, 5390_C|T, 5420_T|C, 5429_G|A, 5432_A|C, 5435_C|T, 5450_T|C, 5456_G|T, 5459_T|C, 5516_T|A, 5567_G|A, 5582_T|C, 5600_C|T, 5612_T|C, 5621_C|A, 5723_T|C, 5732_A|G,
5747_G|A, 5811_C|A, 5828_T|C, 5834_G|A, 5846_T|C, 5867_T|C, 5879_T|G, 5903_A|G, 5937_T|C, 6027_C|A, 6056_C|T, 6092_C|T, 6098_C|T, 6101_T|C, 6152_C|T, 6155_A|G, 6299_C|T, 6363_C|T, 6443_G|A,
6446_G|A, 6473_T|C, 6524_A|G, 6527_C|T, 6584_T|C, 6608_G|A, 6618_C|T, 6629_T|C, 6641_G|T, 6671_T|C, 6674_C|T, 6684_A|C, 6725_T|C, 6737_C|T, 6746_C|T, 6797_T|C, 6803_C|T, 6842_A|G, 6872_C|T,
6890_A|G, 6908_T|A, 6944_G|A, 6954_A|G, 6983_A|G, 6992_A|G, 7014_C|T, 7037_C|T, 7046_T|C, 7049_CT|TC, 7059_T|C, 7064_T|C, 7085_A|G, 7088_G|A, 7136_T|C, 7151_T|C, 7175_C|T, 7178_A|G, 7187_T|C,
7208_A|G, 7233_C|T, 7239_C|T, 7257_T|C, 7292_G|T, 7295_G|A, 7307_T|G, 7313_T|C, 7430_G|A, 7451_AG|CA, 7460_C|T, 7464_A|G, 7466_A|T, 7470_TC|CT, 7475_G|C, 7550_C|T, 7553_G|A, 7568_T|C,
7625_A|T, 7628_C|T, 7633_T|C, 7653_T|C, 7670_G|A, 7679_A|G, 7694_A|G, 7713_T|C, 7739_C|T, 7769_G|A, 7784_G|A, 7805_T|C, 7808_T|A, 7817_G|A, 7844_T|C, 7853_G|T, 7869_C|A, 7871_G|A, 7964_A|G,
7982_A|G, 8007_GT|AC, 8027_G|A, 8069_T|C, 8078_T|G, 8082_C|T, 8093_G|T, 8159_C|A, 8198_A|G, 8213_A|G, 8237_T|C, 8252_G|A, 8353_C|T, 8393_G|A, 8408_T|C, 8450_T|C, 8459_G|A, 8467_T|C, 8477_T|C,
8490_A|C, 8511_A|G, 8516_A|G, 8534_C|T, 8555_C|T, 8570_T|C, 8591_A|G, 8597_T|C, 8606_C|T, 8624_C|T, 8630_A|C, 8660_A|G, 8720_T|C, 8771_A|G, 8789_T|G, 8794_G|A, 8811_T|C, 8813_G|A, 8819_A|G,
8828_C|T, 8849_C|T, 8852_T|C, 8873_C|T, 8882_T|C, 8895_T|C, 8897_A|G, 8918_A|G, 8924_G|A, 8969_T|C, 8997_C|T, 9011_C|T, 9017_T|C, 9053_A|G, 9092_C|T, 9098_T|C, 9128_C|T, 9176_C|T, 9215_C|T,
9224_C|T, 9233_G|A, 9239_T|C, 9244_T|C, 9256_G|A, 9272_C|T, 9275_T|C, 9299_C|T, 9305_C|T, 9326_A|G, 9353_T|C, 9365_A|G, 9427_A|G, 9434_A|G, 9449_T|C, 9452_T|C, 9455_G|A, 9470_G|A, 9488_C|T,
9503_C|T, 9509_T|C, 9518_A|G, 9527_A|G, 9539_T|C, 9582_C|T, 9585_C|A, 9591_T|C, 9599_A|G, 9607_A|G, 9668_C|T, 9677_G|A, 9713_C|T, 9722_T|C, 9728_A|G, 9749_A|G, 9774_GA|AG, 9804_C|T, 9806_C|T,
9821_CC|TT, 9824_T|C, 9851_T|C, 9857_C|T, 9884_G|A, 9896_T|A, 9950_G|A, 9965_C|T, 10004_T|C, 10052_T|C, 10094_A|G, 10148_A|G, 10163_T|C, 10208_G|A, 10223_C|T, 10238_G|A, 10244_C|T, 10247_C|T,
10266_A|G, 10331_C|T, 10361_T|C, 10374_C|T, 10376_G|A, 10388_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10612_T|C, 10654_A|G, 10666_T|C
Case 4 (A.1): KX601167.1
| Target: 995 samples | Number of changes: 466 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 460-461, 463-464 | BC BR coord: 10391 - 10392, 10611 - 10612 |
| Direction L1: >> | Initial region span: 1-460,461-463,464-466 | Gap history (edge excluded): 460-464 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.70e-03 | |
| Rec. model vs L1: 1.28e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
460 |
48.181794 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
463 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
461 |
-0.710160 |
-1.941794 |
9.883589 |
4.700906e-03 |
* |
|
|
| A.1.NmC2 |
0 |
461 |
-10.000000 |
-19.755055 |
45.510109 |
8.614407e-11 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
464 |
0.705991 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 206_G|A, 212_C|T, 233_G|A, 254_A|G, 257_T|A, 266_T|C, 320_A|C, 419_A|T, 428_T|C, 431_T|C, 467_T|C, 475_C|T, 485_T|C, 515_G|A, 523_A|G, 558_T|C, 564_A|G, 578_T|C, 617_C|A, 639_C|T, 653_G|A,
674_T|C, 689_G|A, 692_A|G, 734_A|G, 770_C|T, 803_A|G, 842_T|C, 878_C|T, 884_A|G, 899_C|T, 957_C|T, 977_C|T, 1007_C|T, 1034_T|C, 1070_C|T, 1091_A|G, 1094_G|A, 1100_C|T, 1103_C|T, 1110_C|T,
1115_T|C, 1124_A|G, 1127_C|T, 1160_T|C, 1175_A|G, 1232_A|G, 1250_C|T, 1277_C|T, 1298_T|C, 1328_T|C, 1355_C|T, 1379_T|C, 1433_C|T, 1520_G|A, 1607_C|T, 1616_C|G, 1634_C|T, 1644_T|C, 1655_C|T,
1682_C|T, 1701_C|T, 1769_A|C, 1781_C|T, 1793_T|C, 1854_C|T, 1865_T|C, 1898_G|A, 1907_A|G, 1940_A|G, 1946_C|T, 1973_C|T, 1991_T|C, 2021_C|T, 2066_C|T, 2069_A|G, 2090_C|T, 2093_T|A, 2103_C|T,
2114_T|C, 2129_C|T, 2150_C|T, 2156_G|T, 2178_C|T, 2198_T|C, 2228_T|C, 2279_T|C, 2285_C|T, 2381_T|A, 2394_A|G, 2437_T|C, 2469_T|C, 2474_C|T, 2501_C|T, 2525_G|A, 2540_A|G, 2606_C|T, 2633_A|G,
2648_T|G, 2654_C|T, 2681_G|A, 2687_C|T, 2723_CT|TC, 2792_A|G, 2798_A|G, 2804_C|T, 2816_C|T, 2831_C|T, 2840_T|C, 2858_C|T, 2864_A|G, 2876_A|C, 2879_T|C, 2891_C|T, 2921_A|G, 2925_G|A, 2930_T|C,
2963_T|C, 2996_C|T, 2999_G|A, 3002_T|C, 3008_A|G, 3014_T|C, 3038_T|C, 3041_T|A, 3052_T|C, 3059_G|A, 3068_T|C, 3071_A|G, 3104_G|A, 3110_T|C, 3134_C|T, 3137_T|C, 3140_A|G, 3180_T|C, 3186_G|A,
3203_G|A, 3218_T|A, 3221_C|T, 3248_T|C, 3254_T|C, 3275_C|T, 3279_A|G, 3290_A|G, 3296_C|T, 3314_T|C, 3329_C|T, 3332_G|A, 3338_T|C, 3368_A|G, 3377_A|G, 3380_T|C, 3434_G|A, 3450_C|T, 3464_T|A,
3506_A|G, 3515_A|G, 3518_C|T, 3522_T|C, 3534_G|A, 3666_C|T, 3705_C|T, 3723_T|C, 3731_C|T, 3806_A|C, 3818_A|C, 3836_T|C, 3854_A|G, 3881_T|C, 3885_T|C, 3906_T|C, 3973_T|C, 3989_T|C, 4034_G|A,
4049_G|A, 4076_C|T, 4085_T|C, 4106_A|G, 4112_C|T, 4128_T|C, 4146_C|T, 4172_C|T, 4238_C|T, 4268_C|T, 4272_T|C, 4277_T|C, 4292_G|A, 4322_C|T, 4325_G|A, 4328_C|T, 4331_T|C, 4343_C|T, 4424_C|T,
4436_T|C, 4454_G|A, 4493_C|T, 4589_C|T, 4592_A|G, 4595_C|T, 4610_A|G, 4682_C|T, 4688_A|G, 4697_T|C, 4733_T|C, 4751_T|C, 4790_A|G, 4829_C|T, 4856_T|C, 4859_A|G, 4877_C|T, 4886_G|A, 4904_C|T,
4961_T|C, 4982_T|C, 4988_G|A, 4994_G|T, 5000_T|C, 5027_A|G, 5060_T|C, 5090_G|A, 5144_G|A, 5153_G|A, 5189_A|G, 5192_CT|TC, 5267_T|C, 5270_T|G, 5277_T|C, 5279_A|G, 5342_T|C, 5357_C|T, 5375_A|G,
5387_C|T, 5390_C|T, 5420_T|C, 5429_G|A, 5432_A|C, 5435_C|T, 5450_T|C, 5456_G|T, 5459_T|C, 5516_T|A, 5567_G|A, 5582_T|C, 5600_C|T, 5612_T|C, 5621_C|A, 5723_T|C, 5732_A|G, 5747_G|A, 5811_C|A,
5828_T|C, 5834_G|A, 5846_T|C, 5867_T|C, 5879_T|G, 5903_A|G, 5937_T|C, 6027_C|A, 6056_C|T, 6092_C|T, 6098_C|T, 6101_T|C, 6152_C|T, 6155_A|G, 6299_C|T, 6363_C|T, 6443_G|A, 6446_G|A, 6473_T|C,
6524_A|G, 6527_C|T, 6584_T|C, 6608_G|A, 6618_C|T, 6629_T|C, 6641_G|T, 6671_T|C, 6674_C|T, 6684_A|C, 6725_T|C, 6737_C|T, 6746_C|T, 6797_T|C, 6803_C|T, 6842_A|G, 6872_C|T, 6890_A|G, 6908_T|A,
6944_G|A, 6954_A|G, 6983_A|G, 6992_A|G, 7014_C|T, 7037_C|T, 7046_T|C, 7049_CT|TC, 7059_T|C, 7064_T|C, 7085_A|G, 7088_G|A, 7136_T|C, 7151_T|C, 7175_C|T, 7178_A|G, 7187_T|C, 7208_A|G, 7233_C|T,
7239_C|T, 7257_T|C, 7292_G|T, 7295_G|A, 7307_T|G, 7313_T|C, 7430_G|A, 7451_AG|CA, 7460_C|T, 7464_A|G, 7466_A|T, 7470_TC|CT, 7475_G|C, 7550_C|T, 7553_G|A, 7568_T|C, 7625_A|T, 7628_C|T,
7633_T|C, 7653_T|C, 7670_G|A, 7679_A|G, 7694_A|G, 7713_T|C, 7739_C|T, 7769_G|A, 7784_G|A, 7805_T|C, 7808_T|A, 7817_G|A, 7844_T|C, 7853_G|T, 7869_C|A, 7871_G|A, 7964_A|G, 7982_A|G, 8007_GT|AC,
8027_G|A, 8069_T|C, 8078_T|G, 8082_C|T, 8093_G|T, 8159_C|A, 8198_A|G, 8213_A|G, 8237_T|C, 8252_G|A, 8353_C|T, 8393_G|A, 8408_T|C, 8450_T|C, 8459_G|A, 8467_T|C, 8477_T|C, 8490_A|C, 8511_A|G,
8516_A|G, 8534_C|T, 8555_C|T, 8570_T|C, 8591_A|G, 8597_T|C, 8606_C|T, 8624_C|T, 8630_A|C, 8660_A|G, 8720_T|C, 8771_A|G, 8789_T|G, 8794_G|A, 8811_T|C, 8813_G|A, 8819_A|G, 8828_C|T, 8849_C|T,
8852_T|C, 8873_C|T, 8882_T|C, 8895_T|C, 8897_A|G, 8918_A|G, 8924_G|A, 8969_T|C, 8997_C|T, 9011_C|T, 9017_T|C, 9053_A|G, 9092_C|T, 9098_T|C, 9128_C|T, 9176_C|T, 9215_C|T, 9224_C|T, 9233_G|A,
9239_T|C, 9244_T|C, 9256_G|A, 9272_C|T, 9275_T|C, 9299_C|T, 9305_C|T, 9326_A|G, 9353_T|C, 9365_A|G, 9427_A|G, 9434_A|G, 9449_T|C, 9452_T|C, 9455_G|A, 9470_G|A, 9488_C|T, 9503_C|T, 9509_T|C,
9518_A|G, 9527_A|G, 9539_T|C, 9582_C|T, 9585_C|A, 9591_T|C, 9599_A|G, 9607_A|G, 9668_C|T, 9677_G|A, 9713_C|T, 9722_T|C, 9728_A|G, 9749_A|G, 9774_GA|AG, 9806_C|T, 9821_CC|TT, 9824_T|C,
9851_T|C, 9857_C|T, 9884_G|A, 9896_T|A, 9950_G|A, 9965_C|T, 10004_T|C, 10052_T|C, 10094_A|G, 10148_A|G, 10163_T|C, 10208_G|A, 10223_C|T, 10238_G|A, 10244_C|T, 10247_C|T, 10266_A|G, 10331_C|T,
10361_T|C, 10374_C|T, 10376_G|A, 10388_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10612_T|C, 10654_A|G, 10666_T|C
Case 4 (A.1): KX694533.2
| Target: 995 samples | Number of changes: 469 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 463-464, 466-467 | BC BR coord: 10391 - 10392, 10611 - 10612 |
| Direction L1: >> | Initial region span: 1-463,464-466,467-469 | Gap history (edge excluded): 463-467 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.70e-03 | |
| Rec. model vs L1: 1.27e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
463 |
48.965966 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
466 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
464 |
-0.710160 |
-1.941794 |
9.883589 |
4.700906e-03 |
* |
|
|
| A.1.NmC2 |
0 |
464 |
-10.000000 |
-19.755055 |
45.510109 |
8.614407e-11 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
467 |
0.705991 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 56_G|A, 206_G|A, 212_C|T, 233_G|A, 254_A|G, 257_T|A, 266_T|C, 320_A|C, 419_A|T, 428_T|C, 431_T|C, 467_T|C, 475_C|T, 485_T|C, 515_G|A, 523_A|G, 534_G|A, 558_T|C, 564_A|G, 578_T|C, 617_C|A,
639_C|T, 653_G|A, 674_T|C, 689_G|A, 692_A|G, 734_A|G, 770_C|T, 803_A|G, 842_T|C, 878_C|T, 884_A|G, 899_C|T, 957_C|T, 977_C|T, 1007_C|T, 1034_T|C, 1070_C|T, 1091_A|G, 1094_G|A, 1100_C|T,
1103_C|T, 1110_C|T, 1115_T|C, 1124_A|G, 1127_C|T, 1160_T|C, 1175_A|G, 1232_A|G, 1250_C|T, 1277_C|T, 1298_T|C, 1328_T|C, 1355_C|T, 1379_T|C, 1433_C|T, 1444_C|T, 1520_G|A, 1607_C|T, 1616_C|G,
1634_C|T, 1644_T|C, 1655_C|T, 1682_C|T, 1701_C|T, 1769_A|C, 1781_C|T, 1793_T|C, 1854_C|T, 1865_T|C, 1898_G|A, 1907_A|G, 1940_A|G, 1946_C|T, 1973_C|T, 1991_T|C, 2021_C|T, 2066_C|T, 2069_A|G,
2090_C|T, 2093_T|A, 2103_C|T, 2114_T|C, 2129_C|T, 2150_C|T, 2156_G|T, 2198_T|C, 2228_T|C, 2279_T|C, 2285_C|T, 2381_T|A, 2394_A|G, 2437_T|C, 2469_T|C, 2474_C|T, 2501_C|T, 2525_G|A, 2540_A|G,
2606_C|T, 2633_A|G, 2648_T|G, 2654_C|T, 2681_G|A, 2687_C|T, 2723_CT|TC, 2792_A|G, 2798_A|G, 2804_C|T, 2816_C|T, 2831_C|T, 2840_T|C, 2858_C|T, 2864_A|G, 2876_A|C, 2879_T|C, 2891_C|T, 2921_A|G,
2925_G|A, 2930_T|C, 2963_T|C, 2996_C|T, 2999_G|A, 3002_T|C, 3008_A|G, 3014_T|C, 3038_T|C, 3041_T|A, 3052_T|C, 3059_G|A, 3068_T|C, 3071_A|G, 3104_G|A, 3110_T|C, 3134_C|T, 3137_T|C, 3140_A|G,
3180_T|C, 3186_G|A, 3203_G|A, 3218_T|A, 3221_C|T, 3248_T|C, 3254_T|C, 3275_C|T, 3279_A|G, 3290_A|G, 3296_C|T, 3314_T|C, 3329_C|T, 3332_G|A, 3338_T|C, 3368_A|G, 3377_A|G, 3380_T|C, 3434_G|A,
3450_C|T, 3464_T|A, 3506_A|G, 3515_A|G, 3518_C|T, 3522_T|C, 3534_G|A, 3666_C|T, 3705_C|T, 3723_T|C, 3731_C|T, 3806_A|C, 3818_A|C, 3836_T|C, 3854_A|G, 3881_T|C, 3885_T|C, 3895_C|T, 3906_T|C,
3973_T|C, 3989_T|C, 4034_G|A, 4049_G|A, 4076_C|T, 4085_T|C, 4106_A|G, 4112_C|T, 4128_T|C, 4146_C|T, 4172_C|T, 4238_C|T, 4268_C|T, 4272_T|C, 4277_T|C, 4292_G|A, 4322_C|T, 4325_G|A, 4328_C|T,
4331_T|C, 4343_C|T, 4424_C|T, 4436_T|C, 4454_G|A, 4493_C|T, 4589_C|T, 4592_A|G, 4595_C|T, 4610_A|G, 4682_C|T, 4688_A|G, 4697_T|C, 4733_T|C, 4751_T|C, 4790_A|G, 4829_C|T, 4856_T|C, 4859_A|G,
4877_C|T, 4886_G|A, 4904_C|T, 4961_T|C, 4982_T|C, 4988_G|A, 4994_G|T, 5000_T|C, 5027_A|G, 5060_T|C, 5090_G|A, 5144_G|A, 5153_G|A, 5189_A|G, 5192_CT|TC, 5267_T|C, 5270_T|G, 5277_T|C, 5279_A|G,
5342_T|C, 5357_C|T, 5375_A|G, 5387_C|T, 5390_C|T, 5420_T|C, 5429_G|A, 5432_A|C, 5435_C|T, 5450_T|C, 5456_G|T, 5459_T|C, 5516_T|A, 5567_G|A, 5582_T|C, 5600_C|T, 5612_T|C, 5621_C|A, 5723_T|C,
5732_A|G, 5747_G|A, 5811_C|A, 5828_T|C, 5834_G|A, 5846_T|C, 5867_T|C, 5879_T|G, 5903_A|G, 5937_T|C, 6027_C|A, 6056_C|T, 6092_C|T, 6098_C|T, 6101_T|C, 6152_C|T, 6155_A|G, 6299_C|T, 6363_C|T,
6443_G|A, 6446_G|A, 6473_T|C, 6524_A|G, 6527_C|T, 6584_T|C, 6608_G|A, 6618_C|T, 6629_T|C, 6641_G|T, 6671_T|C, 6674_C|T, 6684_A|C, 6725_T|C, 6737_C|T, 6746_C|T, 6797_T|C, 6803_C|T, 6842_A|G,
6872_C|T, 6890_A|G, 6908_T|A, 6944_G|A, 6954_A|G, 6983_A|G, 6992_A|G, 7014_C|T, 7037_C|T, 7046_T|C, 7049_CT|TC, 7059_T|C, 7064_T|C, 7085_A|G, 7088_G|A, 7136_T|C, 7151_T|C, 7175_C|T, 7178_A|G,
7187_T|C, 7208_A|G, 7233_C|T, 7239_C|T, 7257_T|C, 7292_G|T, 7295_G|A, 7307_T|G, 7313_T|C, 7430_G|A, 7451_AG|CA, 7460_C|T, 7464_A|G, 7466_A|T, 7470_TC|CT, 7475_G|C, 7550_C|T, 7553_G|A,
7568_T|C, 7625_A|T, 7628_C|T, 7633_T|C, 7653_T|C, 7670_G|A, 7679_A|G, 7694_A|G, 7713_T|C, 7739_C|T, 7769_G|A, 7784_G|A, 7805_T|C, 7808_T|A, 7817_G|A, 7844_T|C, 7853_G|T, 7869_C|A, 7871_G|A,
7964_A|G, 7982_A|G, 8007_GT|AC, 8027_G|A, 8069_T|C, 8078_T|G, 8082_C|T, 8093_G|T, 8159_C|A, 8198_A|G, 8213_A|G, 8237_T|C, 8252_G|A, 8353_C|T, 8393_G|A, 8408_T|C, 8450_T|C, 8459_G|A, 8467_T|C,
8477_T|C, 8490_A|C, 8511_A|G, 8516_A|G, 8534_C|T, 8555_C|T, 8570_T|C, 8591_A|G, 8597_T|C, 8606_C|T, 8624_C|T, 8630_A|C, 8660_A|G, 8720_T|C, 8771_A|G, 8789_T|G, 8794_G|A, 8811_T|C, 8813_G|A,
8819_A|G, 8828_C|T, 8849_C|T, 8852_T|C, 8873_C|T, 8882_T|C, 8895_T|C, 8897_A|G, 8918_A|G, 8924_G|A, 8969_T|C, 8997_C|T, 9011_C|T, 9017_T|C, 9053_A|G, 9092_C|T, 9098_T|C, 9128_C|T, 9176_C|T,
9215_C|T, 9224_C|T, 9233_G|A, 9239_T|C, 9244_T|C, 9256_G|A, 9272_C|T, 9275_T|C, 9299_C|T, 9305_C|T, 9326_A|G, 9353_T|C, 9365_A|G, 9427_A|G, 9434_A|G, 9449_T|C, 9452_T|C, 9455_G|A, 9470_G|A,
9488_C|T, 9503_C|T, 9509_T|C, 9518_A|G, 9527_A|G, 9539_T|C, 9582_C|T, 9585_C|A, 9591_T|C, 9599_A|G, 9607_A|G, 9668_C|T, 9677_G|A, 9713_C|T, 9722_T|C, 9728_A|G, 9749_A|G, 9774_GA|AG, 9806_C|T,
9821_CC|TT, 9824_T|C, 9851_T|C, 9857_C|T, 9884_G|A, 9896_T|A, 9950_G|A, 9965_C|T, 10004_T|C, 10052_T|C, 10094_A|G, 10148_A|G, 10163_T|C, 10208_G|A, 10223_C|T, 10238_G|A, 10244_C|T, 10247_C|T,
10266_A|G, 10331_C|T, 10361_T|C, 10374_C|T, 10376_G|A, 10388_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10612_T|C, 10654_A|G, 10666_T|C
Case 4 (A.1): MG645981.1
| Target: 995 samples | Number of changes: 148 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 81-82, 84-85 | BC BR coord: 5287 - 5288, 5560 - 5561 |
| Direction L1: >> | Initial region span: 1-10,83-84,85-148 | Gap history (edge excluded): 10-85 -> 10-83 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.09e-13 | |
| Rec. model vs L1: 6.38e+01 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
10 |
1.974196 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
83 |
3.012208 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
84 |
-0.964789 |
-1.418915 |
10.83783 |
2.138276e+00 |
* |
* |
|
| A.1.NmC2 |
0 |
84 |
-10.000000 |
-30.000000 |
68.00000 |
8.278040e-13 |
|
* |
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
85 |
1.692512 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 102_C|T, 122_A|G, 130_C|T, 164_C|G, 216_C|T, 254_A|G, 423_G|A, 467_T|C, 475_C|T, 523_AC|GT, 558_T|C, 653_G|A, 718_AT|GC, 803_A|G, 1070_C|T, 1175_A|G, 1343_C|T, 1481_G|C, 1535_A|T, 1577_T|C,
1616_C|T, 1621_A|G, 1655_C|T, 1908_G|T, 1922_C|T, 2066_C|T, 2285_C|T, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3038_T|C, 3050_T|C,
3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3167_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3282_A|G, 3332_G|A, 3473_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3806_A|T, 3854_A|G,
3885_T|C, 3989_T|C, 4085_T|C, 4106_A|G, 4108_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4697_T|C, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C,
5036_C|T, 5060_T|C, 5066_C|T, 5213_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5825_C|A, 5828_T|C, 5937_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_CA|TG, 6443_G|A, 6473_T|C,
6533_A|G, 6584_T|C, 6629_T|C, 6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7157_C|T, 7319_C|T, 7451_A|C, 7517_C|T, 7568_T|C, 7633_T|C, 7679_A|G, 7700_A|G, 7713_T|C, 7805_T|C,
7869_C|A, 8000_A|G, 8007_G|A, 8105_C|T, 8408_T|C, 8516_A|G, 8597_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9225_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9673_T|G,
9677_G|A, 9704_C|T, 9815_C|T, 9884_G|A, 9896_T|A, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A, 10386_A|G, 10392_A|G, 10477_T|C, 10561_T|C, 10685_G|C
Case 4 (A.1): MH158236.1
| Target: 995 samples | Number of changes: 176 | |
| BC: A.1 + A.1.NmC1 | BC BR: 172-173 | BC BR coord: 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-172,173-176 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.96e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
172 |
3.70039 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
173 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 122_A|G, 254_A|G, 359_C|T, 423_G|A, 467_T|C, 475_C|T, 496_G|A, 523_A|G, 558_T|A, 653_G|A, 719_T|C, 803_A|G, 837_T|C, 1070_C|T, 1175_A|G, 1337_A|T, 1343_C|T, 1442_C|T, 1616_C|T, 1655_C|T,
1736_A|G, 1922_C|T, 2066_C|T, 2093_T|C, 2111_T|G, 2156_G|A, 2282_A|G, 2285_C|T, 2298_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2570_C|T, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C,
2828_C|T, 2864_A|G, 2925_G|A, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3296_C|T, 3332_G|A, 3473_C|T, 3518_C|T,
3534_G|A, 3605_G|A, 3617_G|A, 3731_C|T, 3767_A|T, 3806_A|T, 3827_C|T, 3854_A|G, 3885_T|C, 3928_T|C, 3989_T|C, 4085_T|C, 4094_C|T, 4106_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T,
4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5036_C|T, 5060_T|C, 5066_C|T, 5096_T|C, 5267_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5717_C|T,
5828_T|C, 5937_T|C, 6002_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_C|T, 6443_G|A, 6473_T|C, 6512_C|T, 6533_A|G, 6584_T|C, 6608_G|A, 6626_C|T, 6629_T|C, 6684_A|C, 6746_C|T, 6890_A|G,
6983_A|G, 6989_C|T, 7037_C|T, 7049_CT|TC, 7148_T|C, 7157_C|T, 7175_C|T, 7451_A|T, 7493_G|T, 7517_C|T, 7538_A|G, 7568_T|C, 7577_T|C, 7604_T|C, 7633_T|C, 7679_A|G, 7713_T|C, 7805_T|C, 7826_T|C,
7869_C|A, 7937_C|T, 8007_G|A, 8105_C|T, 8387_C|T, 8408_T|C, 8429_G|A, 8516_A|G, 8597_T|C, 8823_C|T, 8888_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9200_G|A, 9225_C|T, 9272_C|T, 9305_C|T, 9353_T|C,
9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9677_G|A, 9704_C|T, 9758_A|G, 9884_G|A, 9887_C|T, 9896_T|A, 9899_A|G, 10217_A|G, 10281_G|A, 10286_C|T, 10314_A|G, 10349_T|C, 10361_T|C,
10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): MT377502.1
| Target: 995 samples | Number of changes: 142 | |
| BC: A.1 + A.1.NmC1 | BC BR: 136-137 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-6,140-142 | Gap history (edge excluded): 6-140 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.93e+15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.032875 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
140 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 122_A|G, 254_A|G, 423_G|A, 467_T|C, 475_C|T, 523_AC|GT, 558_T|C, 653_G|A, 719_T|C, 803_A|G, 1070_C|T, 1175_A|G, 1241_T|C, 1343_C|T, 1535_A|G, 1577_T|C, 1616_C|T, 1621_A|G, 1655_C|T,
1908_G|T, 1922_C|T, 2066_C|T, 2285_C|T, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A, 3071_A|G,
3110_T|C, 3137_T|C, 3140_A|G, 3167_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3283_A|C, 3332_G|A, 3473_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3806_A|T, 3854_A|G, 3885_T|C, 3989_T|C, 4051_C|T,
4085_T|C, 4106_A|G, 4108_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4697_T|C, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5036_C|T, 5060_T|C,
5066_C|T, 5213_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_CA|TG, 6443_G|A, 6473_T|C, 6533_A|G, 6584_T|C, 6629_T|C,
6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7157_C|T, 7319_C|T, 7451_A|C, 7517_C|T, 7568_T|C, 7633_T|C, 7679_A|G, 7700_A|G, 7713_T|C, 7805_T|C, 7869_C|A, 8000_A|G, 8007_G|A,
8105_C|T, 8408_T|C, 8516_A|G, 8597_T|C, 9017_T|C, 9098_T|C, 9128_C|T, 9176_C|T, 9225_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9728_A|G, 9752_G|A, 9809_C|T, 9953_A|G,
10208_GT|AG, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A, 10386_A|G, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): MT377504.1
| Target: 995 samples | Number of changes: 143 | |
| BC: A.1 + A.1.NmC1 | BC BR: 137-138 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-6,141-143 | Gap history (edge excluded): 6-141 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.93e+15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.032875 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
141 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
88 |
1.162314 |
-1.37812 |
16.756239 |
1.885738e+08 |
* |
|
|
|
Target sequence
, 122_A|G, 254_A|G, 423_G|A, 467_T|C, 475_C|T, 523_AC|GT, 558_T|C, 653_G|A, 719_T|C, 803_A|G, 1070_C|T, 1175_A|G, 1343_C|T, 1535_A|G, 1577_T|C, 1616_C|T, 1621_A|G, 1655_C|T, 1908_G|T,
1922_C|T, 2066_C|T, 2285_C|T, 2298_T|C, 2305_A|G, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A,
3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3167_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3283_A|C, 3332_G|A, 3473_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3806_A|T, 3854_A|G, 3885_T|C, 3989_T|C,
4051_C|T, 4085_T|C, 4106_A|G, 4108_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4697_T|C, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5036_C|T,
5060_T|C, 5066_C|T, 5213_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_CA|TG, 6443_G|A, 6473_T|C, 6533_A|G, 6584_T|C,
6629_T|C, 6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7157_C|T, 7319_C|T, 7451_A|C, 7517_C|T, 7568_T|C, 7633_T|C, 7679_A|G, 7700_A|G, 7713_T|C, 7805_T|C, 7869_C|A, 8000_A|G,
8007_G|A, 8105_C|T, 8408_T|C, 8516_A|G, 8597_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9225_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9677_G|A, 9704_C|T, 9815_C|T,
9884_G|A, 9896_T|A, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A, 10386_A|G, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): MW015936.1
| Target: 995 samples | Number of changes: 142 | |
| BC: A.1 + A.1.NmC1 | BC BR: 136-137 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-6,140-142 | Gap history (edge excluded): 6-140 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.93e+15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
6 |
1.032875 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
140 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
127 |
0.840794 |
-1.37812 |
16.756239 |
1.885738e+08 |
* |
|
|
|
Target sequence
, 122_A|G, 254_A|G, 423_G|A, 467_T|C, 475_C|T, 523_AC|GT, 558_T|C, 653_G|A, 719_T|C, 803_A|G, 1070_C|T, 1175_A|G, 1343_C|T, 1577_T|C, 1616_C|T, 1655_C|T, 1741_T|C, 1908_G|T, 1922_C|T,
2066_C|T, 2285_C|T, 2298_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C,
3137_T|C, 3140_A|G, 3149_G|A, 3167_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3473_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3806_A|T, 3854_A|G, 3885_T|C, 3989_T|C, 4085_T|C, 4106_A|G,
4108_A|G, 4238_C|T, 4295_A|G, 4319_G|A, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4697_T|C, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5036_C|T, 5060_T|C, 5066_C|T,
5231_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_C|T, 6443_G|A, 6473_T|C, 6533_A|G, 6584_T|C, 6629_T|C, 6684_A|C,
6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7157_C|T, 7319_C|T, 7451_A|C, 7517_C|T, 7568_T|C, 7633_T|C, 7679_A|G, 7700_A|G, 7713_T|C, 7805_T|C, 7869_C|A, 8000_A|G, 8007_G|A, 8105_C|T,
8408_T|C, 8516_A|G, 8597_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9180_G|C, 9225_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9677_G|A, 9704_C|T, 9815_C|T, 9884_G|A,
9896_T|A, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A, 10386_A|G, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): OP281680.1
| Target: 995 samples | Number of changes: 148 | |
| BC: A.1 + A.1.NmC1 | BC BR: 142-143 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-12,146-148 | Gap history (edge excluded): 12-146 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.93e+15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
12 |
2.444857 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
146 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
133 |
0.840794 |
-1.37812 |
16.756239 |
1.885738e+08 |
* |
|
|
|
Target sequence
, 122_A|G, 127_A|G, 138_T|G, 145_T|G, 183_CC|TT, 187_T|A, 218_T|A, 254_A|G, 423_G|A, 467_T|C, 475_C|T, 523_AC|GT, 558_T|C, 653_G|A, 719_T|C, 803_A|G, 1070_C|T, 1175_A|G, 1343_C|T, 1577_T|C,
1616_C|T, 1655_C|T, 1908_G|T, 1922_C|T, 2066_C|T, 2285_C|T, 2298_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3038_T|C, 3050_T|C,
3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3149_G|A, 3167_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3473_C|T, 3518_C|T, 3534_G|A, 3731_C|T, 3806_A|T, 3854_A|G,
3885_T|C, 3989_T|C, 4085_T|C, 4106_A|G, 4108_A|G, 4238_C|T, 4295_A|G, 4454_G|A, 4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4697_T|C, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C,
5036_C|T, 5060_T|C, 5066_C|T, 5231_T|C, 5369_C|T, 5375_A|G, 5387_C|T, 5561_C|T, 5591_T|C, 5770_T|C, 5772_A|C, 5828_T|C, 5937_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_C|T, 6443_G|A,
6473_T|C, 6533_A|G, 6584_T|C, 6629_T|C, 6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 7037_C|T, 7049_CT|TC, 7157_C|T, 7319_C|T, 7451_A|C, 7517_C|T, 7568_T|C, 7633_T|C, 7679_A|G, 7700_A|G, 7713_T|C,
7805_T|C, 7869_C|A, 8000_A|G, 8007_G|A, 8105_C|T, 8408_T|C, 8420_G|T, 8516_A|G, 8597_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9225_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G,
9623_C|T, 9677_G|A, 9704_C|T, 9815_C|T, 9884_G|A, 9896_T|A, 10217_A|G, 10281_G|A, 10361_T|C, 10376_G|A, 10386_A|G, 10392_A|G, 10477_T|C, 10561_T|C
Case 4 (A.1): OQ165285.1
| Target: 995 samples | Number of changes: 469 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 463-464, 466-467 | BC BR coord: 10391 - 10392, 10611 - 10612 |
| Direction L1: >> | Initial region span: 1-463,464-466,467-469 | Gap history (edge excluded): 463-467 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.70e-03 | |
| Rec. model vs L1: 1.28e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
463 |
49.059057 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
466 |
3.420355 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
464 |
-0.710160 |
-1.941794 |
9.883589 |
4.700906e-03 |
* |
|
|
| A.1.NmC2 |
0 |
464 |
-10.000000 |
-19.755055 |
45.510109 |
8.614407e-11 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
467 |
0.705991 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 206_G|A, 212_C|T, 233_G|A, 254_A|G, 257_T|A, 266_T|C, 320_A|C, 419_A|T, 428_T|C, 431_T|C, 467_T|C, 475_C|T, 485_T|C, 515_G|A, 523_A|G, 534_G|A, 558_T|C, 564_A|G, 578_T|C, 617_C|A, 639_C|T,
653_G|A, 674_T|C, 689_G|A, 692_A|G, 734_A|G, 770_C|T, 803_A|G, 842_T|C, 878_C|T, 884_A|G, 899_C|T, 957_C|T, 977_C|T, 1007_C|T, 1034_T|C, 1070_C|T, 1091_A|G, 1094_G|A, 1100_C|T, 1103_C|T,
1110_C|T, 1115_T|C, 1124_A|G, 1127_C|T, 1160_T|C, 1175_A|G, 1232_A|G, 1250_C|T, 1277_C|T, 1298_T|C, 1328_T|C, 1355_C|T, 1379_T|C, 1433_C|T, 1444_C|T, 1520_G|A, 1607_C|T, 1616_C|G, 1634_C|T,
1644_T|C, 1655_C|T, 1682_C|T, 1701_C|T, 1769_A|C, 1781_C|T, 1793_T|C, 1854_C|T, 1865_T|C, 1898_G|A, 1907_A|G, 1940_A|G, 1946_C|T, 1973_C|T, 1991_T|C, 2021_C|T, 2066_C|T, 2069_A|G, 2090_C|T,
2093_T|A, 2103_C|T, 2114_T|C, 2129_C|T, 2150_C|T, 2156_G|T, 2198_T|C, 2228_T|C, 2279_T|C, 2285_C|T, 2381_T|A, 2394_A|G, 2437_T|C, 2469_T|C, 2474_C|T, 2501_C|T, 2525_G|A, 2540_A|G, 2606_C|T,
2633_A|G, 2648_T|G, 2654_C|T, 2681_G|A, 2687_C|T, 2723_CT|TC, 2792_A|G, 2798_A|G, 2804_C|T, 2816_C|T, 2831_C|T, 2840_T|C, 2858_C|T, 2864_A|G, 2876_A|C, 2879_T|C, 2891_C|T, 2921_A|G, 2925_G|A,
2930_T|C, 2963_T|C, 2996_C|T, 2999_G|A, 3002_T|C, 3008_A|G, 3014_T|C, 3038_T|C, 3041_T|A, 3052_T|C, 3059_G|A, 3068_T|C, 3071_A|G, 3104_G|A, 3110_T|C, 3134_C|T, 3137_T|C, 3140_A|G, 3180_T|C,
3186_G|A, 3203_G|A, 3218_T|A, 3221_C|T, 3248_T|C, 3254_T|C, 3275_C|T, 3279_A|G, 3290_A|G, 3296_C|T, 3314_T|C, 3329_C|T, 3332_G|A, 3338_T|C, 3368_A|G, 3377_A|G, 3380_T|C, 3434_G|A, 3450_C|T,
3464_T|A, 3506_A|G, 3515_A|G, 3518_C|T, 3522_T|C, 3534_G|A, 3666_C|T, 3705_C|T, 3723_T|C, 3731_C|T, 3806_A|C, 3818_A|C, 3836_T|C, 3854_A|G, 3881_T|C, 3885_T|C, 3895_C|T, 3906_T|C, 3973_T|C,
3989_T|C, 4034_G|A, 4049_G|A, 4076_C|T, 4085_T|C, 4106_A|G, 4112_C|T, 4128_T|C, 4146_C|T, 4172_C|T, 4238_C|T, 4268_C|T, 4272_T|C, 4277_T|C, 4292_G|A, 4322_C|T, 4325_G|A, 4328_C|T, 4331_T|C,
4343_C|T, 4424_C|T, 4436_T|C, 4454_G|A, 4493_C|T, 4589_C|T, 4592_A|G, 4595_C|T, 4610_A|G, 4682_C|T, 4688_A|G, 4697_T|C, 4733_T|C, 4751_T|C, 4790_A|G, 4829_C|T, 4856_T|C, 4859_A|G, 4877_C|T,
4886_G|A, 4904_C|T, 4961_T|C, 4982_T|C, 4988_G|A, 4994_G|T, 5000_T|C, 5027_A|G, 5060_T|C, 5090_G|A, 5144_G|A, 5153_G|A, 5189_A|G, 5192_CT|TC, 5267_T|C, 5270_T|G, 5277_T|C, 5279_A|G, 5342_T|C,
5357_C|T, 5375_A|G, 5387_C|T, 5390_C|T, 5420_T|C, 5429_G|A, 5432_A|C, 5435_C|T, 5450_T|C, 5456_G|T, 5459_T|C, 5516_T|A, 5567_G|A, 5582_T|C, 5600_C|T, 5612_T|C, 5621_C|A, 5723_T|C, 5732_A|G,
5747_G|A, 5811_C|A, 5828_T|C, 5834_G|A, 5846_T|C, 5867_T|C, 5879_T|G, 5903_A|G, 5937_T|C, 6027_C|A, 6056_C|T, 6092_C|T, 6098_C|T, 6101_T|C, 6152_C|T, 6155_A|G, 6299_C|T, 6363_C|T, 6443_G|A,
6446_G|A, 6473_T|C, 6524_A|G, 6527_C|T, 6584_T|C, 6608_G|A, 6618_C|T, 6629_T|C, 6641_G|T, 6671_T|C, 6674_C|T, 6684_A|C, 6725_T|C, 6737_C|T, 6746_C|T, 6797_T|C, 6803_C|T, 6842_A|G, 6872_C|T,
6890_A|G, 6908_T|A, 6944_G|A, 6954_A|G, 6983_A|G, 6992_A|G, 7014_C|T, 7037_C|T, 7046_T|C, 7049_CT|TC, 7059_T|C, 7064_T|C, 7085_A|G, 7088_G|A, 7136_T|C, 7151_T|C, 7175_C|T, 7178_A|G, 7187_T|C,
7208_A|G, 7233_C|T, 7239_C|T, 7257_T|C, 7292_G|T, 7295_G|A, 7307_T|G, 7313_T|C, 7430_G|A, 7451_AG|CA, 7460_C|T, 7464_A|G, 7466_A|T, 7470_TC|CT, 7475_G|C, 7550_C|T, 7553_G|A, 7568_T|C,
7625_A|T, 7628_C|T, 7633_T|C, 7653_T|C, 7670_G|A, 7679_A|G, 7694_A|G, 7713_T|C, 7739_C|T, 7769_G|A, 7784_G|A, 7805_T|C, 7808_T|A, 7817_G|A, 7844_T|C, 7853_G|T, 7869_C|A, 7871_G|A, 7964_A|G,
7982_A|G, 8007_GT|AC, 8027_G|A, 8069_T|C, 8078_T|G, 8082_C|T, 8093_G|T, 8159_C|A, 8198_A|G, 8213_A|G, 8237_T|C, 8252_G|A, 8353_C|T, 8393_G|A, 8408_T|C, 8450_T|C, 8459_G|A, 8467_T|C, 8477_T|C,
8490_A|C, 8511_A|G, 8516_A|G, 8534_C|T, 8555_C|T, 8570_T|C, 8591_A|G, 8597_T|C, 8606_C|T, 8624_C|T, 8630_A|C, 8660_A|G, 8720_T|C, 8771_A|G, 8789_T|G, 8794_G|A, 8811_T|C, 8813_G|A, 8819_A|G,
8828_C|T, 8849_C|T, 8852_T|C, 8873_C|T, 8882_T|C, 8895_T|C, 8897_A|G, 8918_A|G, 8924_G|A, 8969_T|C, 8997_C|T, 9011_C|T, 9017_T|C, 9050_G|A, 9053_A|G, 9092_C|T, 9098_T|C, 9128_C|T, 9176_C|T,
9215_C|T, 9224_C|T, 9233_G|A, 9239_T|C, 9244_T|C, 9256_G|A, 9272_C|T, 9275_T|C, 9299_C|T, 9305_C|T, 9326_A|G, 9353_T|C, 9365_A|G, 9427_A|G, 9434_A|G, 9449_T|C, 9452_T|C, 9455_G|A, 9470_G|A,
9488_C|T, 9503_C|T, 9509_T|C, 9518_A|G, 9527_A|G, 9539_T|C, 9582_C|T, 9585_C|A, 9591_T|C, 9599_A|G, 9607_A|G, 9668_C|T, 9677_G|A, 9713_C|T, 9722_T|C, 9728_A|G, 9749_A|G, 9774_GA|AG, 9806_C|T,
9821_CC|TT, 9824_T|C, 9851_T|C, 9857_C|T, 9884_G|A, 9896_T|A, 9950_G|A, 9965_C|T, 10004_T|C, 10052_T|C, 10094_A|G, 10148_A|G, 10163_T|C, 10208_G|A, 10223_C|T, 10238_G|A, 10244_C|T, 10247_C|T,
10266_A|G, 10331_C|T, 10361_T|C, 10374_C|T, 10376_G|A, 10388_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10612_T|C, 10654_A|G, 10666_T|C
Case 4 (A.1): PQ849442.1
| Target: 995 samples | Number of changes: 180 | |
| BC: A.1 + A.1.NmC1 | BC BR: 176-177 | BC BR coord: 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-176,177-180 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.96e-02 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
176 |
3.733704 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
177 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 122_A|G, 254_A|G, 359_C|T, 423_G|A, 467_T|C, 475_C|T, 496_G|A, 523_A|G, 558_T|A, 653_G|A, 719_T|C, 803_A|G, 837_T|C, 1070_C|T, 1175_A|G, 1337_A|T, 1343_C|T, 1442_C|T, 1616_C|T, 1736_A|G,
1865_T|C, 1922_C|T, 2066_C|T, 2093_T|C, 2111_T|G, 2156_G|A, 2282_A|G, 2285_C|T, 2298_T|C, 2375_C|T, 2394_A|G, 2411_C|T, 2525_G|A, 2570_C|T, 2606_C|T, 2648_T|G, 2654_C|T, 2681_G|A, 2724_T|C,
2828_C|T, 2864_A|G, 2925_G|A, 3018_T|C, 3020_A|C, 3038_T|C, 3050_T|C, 3052_T|C, 3059_G|A, 3071_A|G, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3203_G|A, 3218_T|A, 3254_T|C, 3296_C|T, 3332_G|A,
3473_C|T, 3518_C|T, 3534_G|A, 3605_G|A, 3617_G|A, 3731_C|T, 3767_A|T, 3806_A|T, 3827_C|T, 3854_A|G, 3885_T|C, 3928_T|C, 3989_T|C, 4085_T|C, 4094_C|T, 4106_A|G, 4238_C|T, 4295_A|G, 4454_G|A,
4481_G|A, 4493_C|T, 4523_G|A, 4536_A|G, 4592_A|G, 4595_C|T, 4733_T|C, 4751_T|C, 4988_G|A, 5000_T|C, 5012_A|T, 5015_T|C, 5036_C|T, 5060_T|C, 5066_C|T, 5096_T|C, 5267_T|C, 5369_C|T, 5375_A|G,
5387_C|T, 5561_C|T, 5591_T|C, 5717_C|T, 5828_T|C, 5937_T|C, 6002_T|C, 6056_C|T, 6092_C|T, 6101_T|C, 6164_C|T, 6363_C|T, 6443_G|A, 6473_T|C, 6512_C|T, 6533_A|G, 6584_T|C, 6608_G|A, 6626_C|T,
6629_T|C, 6684_A|C, 6746_C|T, 6890_A|G, 6983_A|G, 6989_C|T, 7037_C|T, 7049_CT|TC, 7148_T|C, 7157_C|T, 7175_C|T, 7451_A|T, 7493_G|T, 7517_C|T, 7538_A|G, 7568_T|C, 7577_T|C, 7604_T|C, 7633_T|C,
7679_A|G, 7713_T|C, 7805_T|C, 7826_T|C, 7869_C|A, 7937_C|T, 8007_G|A, 8105_C|T, 8387_C|T, 8408_T|C, 8429_G|A, 8516_A|G, 8597_T|C, 8823_C|T, 8888_T|C, 9017_T|C, 9098_T|C, 9176_C|T, 9200_G|A,
9225_C|T, 9272_C|T, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9503_C|T, 9527_A|G, 9623_C|T, 9677_G|A, 9704_C|T, 9758_A|G, 9884_G|A, 9887_C|T, 9896_T|A, 9899_A|G, 10217_A|G, 10281_G|A,
10286_C|T, 10314_A|G, 10349_T|C, 10361_T|C, 10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): ON142674.1
| Target: 995 samples | Number of changes: 116 | |
| BC: A.1.NmC1 + A.1 | BC BR: 6-7 | BC BR coord: 754 - 755 |
| Direction L1: << | Initial region span: 1-6,60-116 | Gap history (edge excluded): 6-60 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.69e+05 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
6 |
-8.607189 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
60 |
1.413718 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
114 |
0.478191 |
-543.503873 |
1385.007746 |
2.170770e-236 |
|
|
|
|
Target sequence
, 94_G|A, 254_A|G, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 878_C|T, 1067_T|C, 1073_C|T, 1175_A|G, 1403_A|G, 1799_G|A, 1902_A|G, 2031_C|T, 2375_C|T, 2471_A|G, 2552_C|T, 2654_C|T, 2681_G|A,
2724_T|C, 2750_G|A, 2925_G|A, 3059_G|A, 3077_T|C, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3392_C|T, 3464_T|A, 3473_C|T, 3518_C|T, 3534_G|A, 3587_T|C,
3731_C|T, 4005_A|G, 4013_T|C, 4083_T|C, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A, 4238_C|T, 4256_T|A, 4316_C|T, 4454_G|A, 4547_C|T, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C,
5327_G|A, 5375_A|G, 5390_CT|TC, 5420_T|C, 5513_C|T, 5585_C|T, 5591_T|C, 5621_C|T, 5705_A|G, 5810_A|G, 5828_T|C, 5937_T|C, 6056_C|T, 6140_A|G, 6254_T|C, 6363_C|T, 6434_G|A, 6674_C|T, 6889_T|C,
6971_G|A, 6983_A|G, 6992_A|G, 7014_C|T, 7322_G|A, 7451_A|C, 7517_C|T, 7530_T|C, 7633_T|C, 7646_C|T, 7706_G|A, 7730_C|T, 7805_T|C, 8007_G|A, 8069_T|C, 8082_C|T, 8144_A|T, 8186_A|G, 8222_C|T,
8353_C|T, 8369_C|T, 8381_G|A, 8408_T|C, 8537_G|A, 8702_C|T, 8762_A|G, 8968_CT|TC, 9017_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9473_G|C, 9533_T|C, 9623_C|T, 9722_T|C, 9854_C|T, 10392_AT|GC,
10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): OR264642.1
| Target: 995 samples | Number of changes: 114 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 6-7, 109-110 | BC BR coord: 754 - 755, 10288 - 10289 |
| Direction L1: << | Initial region span: 1-6,7-34,110-114 | Gap history (edge excluded): 6-110 -> 34-110 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.06e-225 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.05e+00 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
6 |
0.074291 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
34 |
2.218083 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
7 |
0.000000 |
-516.051549 |
1328.103099 |
8.057843e-225 |
|
|
|
| A.1.NmC2 |
0 |
7 |
-2.088999 |
-816.622709 |
1929.245418 |
0.000000e+00 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
110 |
3.172373 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 308_T|C, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 758_G|A, 776_C|T, 786_C|T, 878_C|T, 909_T|C, 986_C|T, 1067_T|C, 1073_C|T, 1175_A|G, 1616_C|T, 1799_G|A, 2210_T|C, 2375_C|T, 2471_A|G,
2552_C|T, 2654_C|T, 2681_G|A, 2696_A|G, 2724_T|C, 2750_G|A, 2848_A|G, 2925_G|A, 3059_G|A, 3061_A|T, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3186_G|A, 3218_T|A, 3254_T|C, 3332_G|A, 3464_T|A,
3518_C|T, 3534_G|A, 3731_C|T, 4005_A|G, 4013_T|C, 4083_T|C, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A, 4454_G|A, 4547_C|T, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C, 5327_G|A,
5375_A|G, 5390_CT|TC, 5420_T|C, 5585_C|T, 5591_T|C, 5675_T|C, 5828_T|C, 5937_T|C, 6056_C|T, 6140_A|G, 6248_G|A, 6254_T|C, 6363_C|T, 6674_C|T, 6818_G|A, 6887_A|G, 6983_A|G, 6991_TA|CG,
7014_C|T, 7322_G|A, 7451_A|C, 7517_C|T, 7530_T|C, 7633_T|C, 7646_C|T, 7730_C|T, 7805_T|C, 8007_G|A, 8024_T|C, 8082_C|T, 8123_T|C, 8144_A|T, 8186_A|G, 8207_T|C, 8222_C|T, 8353_C|T, 8369_C|T,
8408_T|C, 8702_C|T, 8969_T|C, 9017_T|C, 9122_A|G, 9197_G|A, 9305_C|T, 9353_T|C, 9434_A|G, 9509_T|C, 9515_C|T, 9722_T|C, 9854_C|T, 10028_T|C, 10392_A|G, 10477_T|C, 10549_C|T, 10561_T|C,
10613_C|T
Case 4 (A.1): OM666892.1
| Target: 995 samples | Number of changes: 182 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 51-52, 59-60 | BC BR coord: 3136 - 3137, 3458 - 3459 |
| Direction L1: >> | Initial region span: 1-51,52-58,127-182 | Gap history (edge excluded): 51-127 -> 58-127 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.86e-20 | |
| Rec. model vs L1: 1.71e-01 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
51 |
2.021809 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
58 |
3.342467 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
81 |
-0.046106 |
-1.364218 |
18.728437 |
6.297610e-02 |
* |
|
|
| A.1.NmC2 |
0 |
55 |
-9.870109 |
-39.829585 |
95.659169 |
1.241762e-18 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
127 |
1.15759 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 75, 138, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 656_A|G, 719_T|C, 773_T|C, 797_G|A, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1067_T|C, 1175_A|G, 1319_G|A,
1559_A|G, 1568_C|T, 1616_C|T, 1916_A|G, 2019_G|A, 2066_C|T, 2309_C|T, 2375_C|T, 2385_A|G, 2394_A|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A,
2774_C|T, 2873_G|A, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T, 2984_T|C, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3338_T|C,
3518_C|T, 3534_G|A, 3566_T|C, 3596_G|A, 3615_C|T, 3671_A|G, 3718_C|T, 3731_C|T, 3836_T|C, 3857_C|T, 3881_T|C, 3908, 3989_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4167_C|T, 4220_G|A, 4322_C|T,
4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 4961_T|C, 5000_T|C, 5030_C|T, 5042_T|C, 5060_T|C, 5096_T|C, 5256_A|G, 5279_A|G, 5297_C|T, 5375_A|G, 5387_C|T,
5421_C|T, 5459_T|C, 5483_A|G, 5555_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5753_A|G, 5798_C|T, 5828_T|C, 5937_T|C, 6029_G|A, 6056_C|T, 6143_T|C, 6176_G|A, 6383_C|A, 6422_T|C, 6545_C|T, 6557_C|T,
6608_G|A, 6645_C|T, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6953, 6980_G|A, 6983_A|G, 7050_T|C, 7172, 7316_T|C, 7343_C|T, 7451_A|C, 7502_G|A, 7517_C|T, 7568_T|C, 7598_G|A, 7633_T|C, 7637_A|G,
7784_G|A, 7805_T|C, 7808_T|C, 7880_G|A, 7887_T|C, 7964_A|G, 7973_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8213_A|G, 8237_T|C, 8303_C|T, 8408_T|C, 8474_C|T, 8504_T|C, 8588_T|C, 8591_A|G,
8606_C|T, 8631_A|G, 8780_T|C, 9011_C|T, 9017_T|C, 9239_T|C, 9305_C|T, 9329_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9506_A|T, 9515_C|T, 9616_A|T, 9704_C|T, 10004_T|C, 10163_T|C, 10206_T|C,
10322_C|T, 10361_T|C, 10376_G|A, 10383_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T, 10711
Case 4 (A.1): OM666893.1
| Target: 995 samples | Number of changes: 181 | |
| BC: A.1 + A.1 | BC BR: 163-164 | BC BR coord: 9439 - 9440 |
| Direction L1: >> | Initial region span: 1-161,179-181 | Gap history (edge excluded): 161-179 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.64e-18 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
161 |
2.08581 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
179 |
0.437871 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80, 138, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 656_A|G, 719_T|C, 773_T|C, 797_G|A, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1067_T|C, 1175_A|G, 1319_G|A,
1559_A|G, 1568_C|T, 1616_C|T, 1916_A|G, 2019_G|A, 2066_C|T, 2309_C|T, 2375_C|T, 2385_A|G, 2394_A|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A,
2774_C|T, 2873_G|A, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T, 2984_T|C, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3338_T|C,
3518_C|T, 3534_G|A, 3566_T|C, 3596_G|A, 3615_C|T, 3671_A|G, 3718_C|T, 3731_C|T, 3836_T|C, 3857_C|T, 3881_T|C, 3908, 3989_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4167_C|T, 4220_G|A, 4322_C|T,
4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 4961_T|C, 5000_T|C, 5030_C|T, 5042_T|C, 5060_T|C, 5096_T|C, 5256_A|G, 5279_A|G, 5297_C|T, 5375_A|G, 5387_C|T,
5421_C|T, 5459_T|C, 5483_A|G, 5555_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5753_A|G, 5798_C|T, 5828_T|C, 5937_T|C, 6029_G|A, 6056_C|T, 6143_T|C, 6176_G|A, 6383_C|A, 6422_T|C, 6545_C|T, 6557_C|T,
6608_G|A, 6645_C|T, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6953, 6980_G|A, 6983_A|G, 7050_T|C, 7172, 7316_T|C, 7343_C|T, 7451_A|C, 7502_G|A, 7517_C|T, 7568_T|C, 7598_G|A, 7633_T|C, 7637_A|G,
7784_G|A, 7805_T|C, 7808_T|C, 7880_G|A, 7887_T|C, 7964_A|G, 7973_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8213_A|G, 8237_T|C, 8303_C|T, 8408_T|C, 8474_C|T, 8504_T|C, 8588_T|C, 8591_A|G,
8606_C|T, 8631_A|G, 8780_T|C, 9239_T|C, 9305_C|T, 9329_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9506_A|T, 9515_C|T, 9616_A|T, 9704_C|T, 10004_T|C, 10163_T|C, 10206_T|C, 10322_C|T, 10361_T|C,
10376_G|A, 10383_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T, 10711, 10749_T|G
Case 4 (A.1): OM666891.1
| Target: 995 samples | Number of changes: 177 | |
| BC: A.1 + A.1.NmC1 + A.1 | BC BR: 53-54, 70-71 | BC BR coord: 3136 - 3137, 3898 - 3899 |
| Direction L1: >> | Initial region span: 1-53,54-62,123-177 | Gap history (edge excluded): 53-123 -> 62-123 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.35e-01 | |
| Rec. model vs L1: 5.90e+27 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
53 |
1.738698 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
62 |
5.071491 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
80 |
-0.617934 |
-1.060408 |
38.120816 |
2.667265e+17 |
* |
|
|
| A.1.NmC2 |
0 |
57 |
-9.870109 |
-101.010280 |
238.020560 |
1.043116e-26 |
|
|
|
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
123 |
0.964819 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 80, 138, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 656_A|G, 719_T|C, 773_T|C, 797_G|A, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1067_T|C, 1175_A|G, 1343_C|T,
1559_A|G, 1568_C|T, 1616_C|T, 2019_G|A, 2066_C|T, 2093_T|C, 2096_G|A, 2309_C|T, 2375_C|T, 2385_A|G, 2394_A|T, 2411_C|T, 2448_T|C, 2504_G|A, 2522_G|A, 2525_G|A, 2606_C|T, 2627_C|T, 2654_C|T,
2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2873_G|A, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T, 2984_T|C, 3038_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C, 3254_T|C,
3332_G|A, 3518_C|T, 3534_G|A, 3566_T|C, 3596_G|A, 3671_A|G, 3718_C|T, 3731_C|T, 3836_T|C, 3857_C|T, 3881_T|C, 3989_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4167_C|T, 4220_G|A, 4322_C|T, 4337_A|G,
4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 4961_T|C, 5000_T|C, 5030_C|T, 5042_T|C, 5060_T|C, 5096_T|C, 5256_A|G, 5279_A|G, 5297_C|T, 5375_A|G, 5387_C|T, 5421_C|T,
5459_T|C, 5483_A|G, 5555_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5753_A|G, 5798_C|T, 5828_T|C, 5937_T|C, 6029_G|A, 6056_C|T, 6062_C|T, 6143_T|C, 6176_G|A, 6422_T|C, 6545_C|T, 6557_C|T, 6645_C|T,
6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6983_A|G, 7050_T|C, 7172, 7238_C|T, 7316_T|C, 7343_C|T, 7451_A|C, 7502_G|A, 7517_C|T, 7568_T|C, 7598_G|A, 7633_T|C, 7637_A|G, 7784_G|A, 7805_T|C,
7808_T|C, 7880_G|A, 7887_T|C, 7964_A|G, 7973_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8213_A|G, 8303_C|T, 8408_T|C, 8474_C|T, 8504_T|C, 8588_T|C, 8591_A|G, 8606_C|T, 8631_A|G, 8780_T|C,
9011_C|T, 9017_T|C, 9239_T|C, 9305_C|T, 9329_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9506_A|T, 9515_C|T, 9616_A|T, 9704_C|T, 10004_T|C, 10163_T|C, 10322_C|T, 10361_T|C, 10376_G|A, 10383_C|T,
10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T, 10711
Case 4 (A.1): OQ734448.1
| Target: 995 samples | Number of changes: 117 | |
| BC: A.1.NmC1 + A.1 | BC BR: 6-7 | BC BR coord: 754 - 755 |
| Direction L1: >> | Initial region span: 1-6,65-117 | Gap history (edge excluded): 6-65 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.36e-01 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
6 |
2.183765 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
65 |
1.198407 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 746_T|C, 878_C|T, 890_A|C, 908_T|G, 932_A|G, 1067_T|C, 1073_C|T, 1115_T|C, 1175_A|G, 1433_C|T, 1616_C|T, 1730_A|G, 1799_G|A, 2210_T|C, 2375_C|T,
2426_T|C, 2471_A|G, 2552_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2750_G|A, 2925_G|A, 3059_G|A, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3171_T|A, 3186_G|A, 3218_T|A, 3230_A|T, 3254_T|C, 3332_G|A,
3387_T|A, 3464_T|A, 3518_C|T, 3534_G|A, 3731_C|T, 3767_A|G, 3954_T|C, 4005_A|G, 4013_T|A, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A, 4433_C|T, 4454_G|A, 4514_C|T, 4547_C|T, 4766_C|T, 4905_T|C,
5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C, 5327_G|A, 5375_A|G, 5390_CT|TC, 5420_T|C, 5552_C|T, 5585_C|T, 5591_T|C, 5759_G|A, 5828_T|C, 5937_T|C, 6056_C|T, 6101_T|C, 6123_A|G, 6140_A|G, 6254_T|C,
6363_C|T, 6500_A|G, 6626_C|T, 6636_T|C, 6674_C|T, 6983_A|G, 6992_A|G, 7014_C|T, 7322_G|A, 7451_A|C, 7517_C|T, 7530_T|C, 7633_T|C, 7646_C|T, 7730_C|T, 7805_T|C, 7832_G|C, 7877_C|T, 7949_C|T,
8007_G|A, 8082_C|T, 8144_A|T, 8186_A|G, 8222_C|T, 8353_C|T, 8369_C|T, 8408_T|C, 8702_C|T, 8895_T|C, 8969_T|C, 9017_T|C, 9179_A|G, 9305_C|T, 9353_T|C, 9434_A|G, 9728_A|G, 9854_C|T, 10001_C|T,
10037_T|C, 10052_T|C
Case 4 (A.1): OR264643.1
| Target: 995 samples | Number of changes: 130 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 8-9, 126-127 | BC BR coord: 754 - 755, 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-4,68-126,127-130 | Gap history (edge excluded): 4-127 -> 4-68 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.03e-272 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 5.76e+09 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
4 |
2.664233 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
68 |
1.611904 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
127 |
0.000000 |
-984.519491 |
2295.038981 |
0.000000e+00 |
|
|
|
| A.1.NmC1 |
0 |
127 |
-1.901631 |
-626.531442 |
1579.062883 |
3.028736e-272 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
127 |
1.925944 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 449_C|T, 523_A|G, 558_T|C, 560_G|A, 578_T|C, 614_C|A, 653_G|A, 878_C|T, 881_G|A, 932_A|G, 1067_T|C, 1073_C|T, 1175_A|G, 1241_T|A, 1340_C|T, 1616_C|T, 1799_G|A, 1815_G|A, 2210_T|C,
2375_C|T, 2471_A|G, 2552_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2750_G|A, 2840_T|C, 2858_C|T, 2925_G|A, 3059_G|A, 3137_T|C, 3140_A|G, 3158_T|C, 3167_A|T, 3182_G|A, 3186_G|A, 3218_T|A, 3233_T|C,
3254_T|C, 3332_G|A, 3464_T|A, 3518_C|T, 3534_G|A, 3705_C|T, 3731_C|T, 3899_C|T, 3935_T|C, 4005_A|G, 4013_T|A, 4061_A|G, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A, 4445_C|T, 4454_G|A, 4517_A|G,
4547_C|T, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C, 5327_G|A, 5375_A|G, 5390_CT|TC, 5420_T|C, 5525_G|A, 5552_C|T, 5585_C|T, 5591_T|C, 5621_C|T, 5792_A|G, 5828_T|C, 5937_T|C,
6056_C|T, 6140_A|G, 6254_T|C, 6363_C|T, 6674_C|T, 6953_A|G, 6983_A|G, 6988_C|A, 6992_A|G, 7014_C|T, 7025_C|T, 7322_G|A, 7361_G|A, 7451_A|C, 7457_C|T, 7467_C|T, 7517_C|T, 7530_T|C, 7633_T|C,
7646_C|T, 7713_T|C, 7730_C|T, 7805_T|C, 7814_A|G, 7888_A|C, 8006_CG|TA, 8082_C|T, 8144_A|T, 8186_A|G, 8190_A|G, 8222_C|T, 8312_T|C, 8353_C|T, 8369_C|T, 8408_T|C, 8467_T|C, 8702_C|T, 8811_T|C,
8969_T|C, 9017_T|C, 9305_C|T, 9346_A|G, 9353_T|C, 9389_C|T, 9434_A|G, 9728_A|G, 9761_C|A, 9854_C|T, 10142_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): OR264644.1
| Target: 995 samples | Number of changes: 138 | |
| BC: A.1.NmC1 + A.1 | BC BR: 7-8 | BC BR coord: 754 - 755 |
| Direction L1: << | Initial region span: 1-6,86-138 | Gap history (edge excluded): 6-86 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.54e+06 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
6 |
0.074291 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
86 |
2.510313 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC1 |
0 |
136 |
0.478191 |
-692.52304 |
1721.04608 |
2.005108e-302 |
|
|
|
|
Target sequence
, 254_A|G, 308_T|C, 523_A|G, 558_T|C, 578_T|C, 653_G|A, 727_A|G, 758_G|A, 786_C|T, 878_C|T, 909_T|C, 986_C|T, 1067_T|C, 1073_C|T, 1175_A|G, 1616_C|T, 1799_G|A, 2129_C|T, 2210_T|C, 2375_C|T,
2394_A|G, 2471_A|G, 2552_C|T, 2648_T|C, 2654_C|T, 2681_G|A, 2696_A|G, 2711_G|A, 2724_T|C, 2750_G|A, 2848_A|G, 2903_C|T, 2925_G|A, 3059_G|A, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3186_G|A,
3218_T|A, 3254_T|C, 3332_G|A, 3450_C|T, 3464_T|A, 3518_C|T, 3534_G|A, 3658_T|C, 3713_G|A, 3731_C|T, 4005_A|G, 4013_T|C, 4015_C|T, 4083_T|C, 4085_T|C, 4104_G|A, 4108_A|G, 4130_A|G, 4166_G|A,
4454_G|A, 4547_C|T, 4697_T|C, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5156_T|C, 5327_G|A, 5375_A|G, 5390_CT|TC, 5414_T|C, 5420_T|C, 5454_C|T, 5585_C|T, 5591_T|C, 5675_T|C, 5690_A|T, 5828_T|C,
5894_G|A, 5937_T|C, 5975_C|T, 6056_C|T, 6140_A|G, 6248_G|A, 6254_T|C, 6363_C|T, 6659_G|A, 6674_C|T, 6818_G|A, 6887_A|G, 6983_A|G, 6991_TA|CG, 7014_C|T, 7322_G|A, 7451_A|C, 7506_C|T, 7517_C|T,
7530_T|C, 7532_G|A, 7607_C|T, 7629_T|C, 7633_T|C, 7646_C|T, 7730_C|T, 7805_T|C, 7865_G|A, 8007_G|A, 8024_T|C, 8082_C|T, 8097_C|T, 8123_T|C, 8144_A|T, 8186_A|G, 8207_T|C, 8222_C|T, 8353_C|T,
8369_C|T, 8408_T|C, 8504_T|C, 8534_C|T, 8547_T|C, 8702_C|T, 8735_C|T, 8969_T|C, 9017_T|C, 9197_G|A, 9305_C|T, 9348_G|A, 9353_T|C, 9434_A|G, 9515_C|T, 9722_T|C, 9854_C|T, 10028_T|C, 10392_A|G,
10470_C|T, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): OR264645.1
| Target: 995 samples | Number of changes: 130 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 4-5, 126-127 | BC BR coord: 559 - 560, 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-4,5-121,127-130 | Gap history (edge excluded): 4-127 -> 121-127 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.38e-279 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 4.45e-01 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
4 |
2.664233 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
121 |
0.218010 |
-4.105711 |
28.211422 |
0.001119 |
* |
|
|
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
121 |
2.584467 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
5 |
-10.000000 |
-1003.051318 |
2340.102636 |
0.000000e+00 |
|
|
|
| A.1.NmC1 |
0 |
5 |
-10.000000 |
-640.493819 |
1614.987637 |
2.377955e-279 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
127 |
1.925944 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 449_C|T, 523_A|G, 558_T|C, 560_G|A, 578_T|C, 639_C|T, 653_G|A, 878_C|T, 881_G|A, 932_A|G, 1067_T|C, 1073_C|T, 1175_A|G, 1265_A|G, 1340_C|T, 1478_T|C, 1616_C|T, 1799_G|A, 1815_G|A,
1922_C|T, 2030_T|C, 2210_T|C, 2375_C|T, 2471_A|G, 2552_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2750_G|A, 2840_T|C, 2925_G|A, 3050_T|C, 3059_G|A, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3186_G|A,
3218_T|A, 3233_T|C, 3254_T|C, 3332_G|A, 3464_T|A, 3518_C|T, 3534_G|A, 3650_C|T, 3731_C|T, 3935_T|C, 4005_A|G, 4013_T|A, 4061_A|G, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A, 4454_G|A, 4547_C|T,
4766_C|T, 4785_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5081_C|A, 5156_T|C, 5189_A|G, 5327_G|A, 5375_A|G, 5390_CT|TC, 5417_A|G, 5420_T|C, 5525_G|A, 5552_C|T, 5585_C|T, 5591_T|C, 5627_G|T,
5828_T|C, 5937_T|C, 6056_C|T, 6137_T|C, 6140_A|G, 6254_T|C, 6363_C|T, 6674_C|T, 6740_A|T, 6953_A|G, 6983_A|G, 6988_C|A, 6992_A|G, 7014_C|T, 7322_G|A, 7361_G|A, 7451_A|C, 7467_C|T, 7517_C|T,
7530_T|C, 7633_T|C, 7646_C|T, 7713_T|C, 7730_C|T, 7805_T|C, 7888_A|C, 8007_G|A, 8082_C|T, 8144_A|T, 8186_A|G, 8222_C|T, 8312_T|C, 8353_C|T, 8369_C|T, 8408_T|C, 8467_T|C, 8496_A|G, 8702_C|T,
8969_T|C, 9017_T|C, 9305_C|T, 9346_A|G, 9353_T|C, 9389_C|T, 9434_A|G, 9572_C|T, 9728_A|G, 9761_C|A, 9854_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): OR264646.1
| Target: 995 samples | Number of changes: 136 | |
| BC: A.1.NmC1 + A.1 + A.1.NmC1 | BC BR: 4-5, 132-133 | BC BR coord: 559 - 560, 10288 - 10289 |
| Direction L1: >> | Initial region span: 1-4,5-42,133-136 | Gap history (edge excluded): 4-133 -> 42-133 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.27e-294 | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 4.45e-01 | |
| Flags: Model_2BP_Best | | |
A.1.NmC1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
4 |
2.664233 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
42 |
1.866708 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
5 |
-10.000000 |
-1072.311084 |
2488.622168 |
0.000000e+00 |
|
|
|
| A.1.NmC1 |
0 |
5 |
-10.000000 |
-677.526440 |
1699.052880 |
3.270744e-294 |
|
|
|
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
133 |
1.925944 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 449_C|T, 523_A|G, 558_T|C, 560_G|A, 578_T|C, 614_C|A, 653_G|A, 878_C|T, 881_G|A, 932_A|G, 1067_T|C, 1073_C|T, 1175_A|G, 1241_T|A, 1340_C|T, 1616_C|T, 1799_G|A, 1815_G|A, 2210_T|C,
2375_C|T, 2388_T|C, 2391_C|T, 2471_A|G, 2552_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2750_G|A, 2840_T|C, 2858_C|T, 2925_G|A, 3059_G|A, 3137_T|C, 3140_A|G, 3158_T|C, 3167_A|T, 3182_G|A, 3186_G|A,
3218_T|A, 3230_A|G, 3233_T|C, 3254_T|C, 3332_G|A, 3464_T|A, 3518_C|T, 3534_G|A, 3705_C|T, 3731_C|T, 3899_C|T, 3935_T|C, 4005_A|G, 4013_T|A, 4061_A|G, 4085_T|C, 4104_G|A, 4108_A|G, 4166_G|A,
4445_C|T, 4454_G|A, 4547_C|T, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C, 5327_G|A, 5375_A|G, 5390_CT|TC, 5420_T|C, 5525_G|A, 5552_C|T, 5585_C|T, 5591_T|C, 5621_C|T, 5792_A|G,
5828_T|C, 5937_T|C, 6056_C|T, 6140_A|G, 6254_T|C, 6363_C|T, 6674_C|T, 6890_A|G, 6953_A|G, 6983_A|G, 6988_C|A, 6992_A|G, 7014_C|T, 7025_C|T, 7322_G|A, 7361_G|A, 7451_A|C, 7457_C|T, 7467_C|T,
7517_C|T, 7530_T|C, 7633_T|C, 7646_C|T, 7713_T|C, 7730_C|T, 7805_T|C, 7814_A|G, 7888_A|C, 8006_CG|TA, 8082_C|T, 8144_A|T, 8186_A|G, 8190_A|G, 8222_C|T, 8312_T|C, 8353_C|T, 8369_C|T, 8408_T|C,
8467_T|C, 8702_C|T, 8811_T|C, 8828_C|T, 8852_T|C, 8969_T|C, 9017_T|C, 9305_C|T, 9346_A|G, 9353_T|C, 9389_C|T, 9434_A|G, 9728_A|G, 9745_C|T, 9761_C|A, 9854_C|T, 10142_C|T, 10392_A|G,
10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): OR264647.1
| Target: 995 samples | Number of changes: 133 | |
| BC: A.1 + A.1.NmC1 | BC BR: 129-130 | BC BR coord: 10288 - 10289 |
| Direction L1: << | Initial region span: 1-40,130-133 | Gap history (edge excluded): 40-130 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.92e+00 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
40 |
0.689759 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
130 |
1.925944 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1 |
995 |
71 |
0.803982 |
-1.739254 |
13.478508 |
0.171187 |
* |
|
|
|
Target sequence
, 254_A|G, 459_A|G, 523_A|G, 558_T|C, 560_G|A, 578_T|C, 614_C|A, 647_G|A, 653_G|A, 878_C|T, 881_G|A, 932_A|G, 1067_T|C, 1073_C|T, 1175_A|G, 1241_T|A, 1340_C|T, 1616_C|T, 1799_G|A, 1815_G|A,
2210_T|C, 2375_C|T, 2471_A|G, 2552_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2750_G|A, 2840_T|C, 2855_C|T, 2858_C|T, 2925_G|A, 3059_G|A, 3137_TC|CT, 3140_A|G, 3158_T|C, 3167_A|T, 3186_G|A, 3218_T|A,
3233_T|C, 3254_T|C, 3332_G|A, 3464_T|A, 3518_C|T, 3534_G|A, 3632_C|T, 3731_C|T, 3899_C|T, 3926_T|C, 3935_T|C, 3986_T|C, 4005_A|G, 4013_T|A, 4030_C|T, 4061_A|G, 4085_T|C, 4104_G|A, 4108_A|G,
4166_G|A, 4445_C|T, 4454_G|A, 4547_C|T, 4766_C|T, 4905_T|C, 5000_T|C, 5021_A|G, 5060_T|C, 5156_T|C, 5327_G|A, 5375_A|G, 5390_CT|TC, 5417_A|C, 5420_T|C, 5525_G|A, 5552_C|T, 5585_C|T, 5591_T|C,
5792_A|G, 5828_T|C, 5937_T|C, 6056_C|T, 6140_A|G, 6254_T|C, 6363_C|T, 6674_C|T, 6953_A|G, 6983_A|G, 6988_C|A, 6992_A|G, 7014_C|T, 7112_C|T, 7322_G|A, 7361_G|A, 7451_A|C, 7457_C|T, 7467_C|T,
7517_C|T, 7530_T|C, 7633_T|C, 7646_C|T, 7713_T|C, 7730_C|T, 7805_T|C, 7814_A|G, 7888_A|C, 8007_G|A, 8082_C|T, 8144_A|T, 8186_A|G, 8222_C|T, 8283_C|T, 8312_T|C, 8348_C|T, 8353_C|T, 8369_C|T,
8408_T|C, 8467_T|C, 8702_C|T, 8969_T|C, 9017_T|C, 9305_C|T, 9346_A|G, 9353_T|C, 9389_C|T, 9434_A|G, 9676_A|G, 9728_A|G, 9761_C|A, 9854_C|T, 10392_A|G, 10477_T|C, 10561_T|C, 10613_C|T
Case 4 (A.1): PQ008648.1
| Target: 995 samples | Number of changes: 204 | |
| BC: A.1 + A.1 | BC BR: 38-39 | BC BR coord: 2533 - 2534 |
| Direction L1: << | Initial region span: 1-37,66-204 | Gap history (edge excluded): 37-66 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.06e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
37 |
1.500082 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
66 |
5.547291 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 482_C|T, 510_T|C, 523_A|G, 558_T|C, 584_G|A, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 837_T|C, 872_T|C, 884_A|G, 914_A|G, 953_AC|GT, 1019_T|C, 1175_A|G,
1217_C|T, 1328_T|C, 1513_C|T, 1559_A|G, 1616_C|T, 1691_C|T, 1787_T|C, 1815_G|A, 1841_C|T, 1850_T|C, 1946_C|T, 2066_C|T, 2111_T|C, 2375_C|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T,
2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2799_T|C, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C,
3254_T|C, 3332_G|A, 3350_G|A, 3425_C|T, 3482_T|C, 3518_C|T, 3534_G|A, 3551_A|G, 3596_G|A, 3671_A|G, 3731_C|T, 3800_C|T, 3812_G|A, 3836_T|C, 3857_C|T, 3881_T|C, 3950_C|T, 3989_T|C, 4013_T|C,
4106_A|G, 4111_G|C, 4133_A|T, 4199_G|T, 4220_G|A, 4225_G|C, 4292_G|T, 4325_G|A, 4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4481_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 5000_T|C, 5030_C|T,
5060_T|C, 5096_T|C, 5279_A|G, 5369_C|T, 5375_A|G, 5384_C|T, 5387_C|T, 5411_C|T, 5421_C|T, 5423_A|G, 5459_T|C, 5555_C|T, 5591_T|C, 5717_C|T, 5801_G|A, 5828_T|C, 5858_C|T, 5864_C|T, 6056_C|T,
6068_A|G, 6143_T|C, 6185_T|C, 6404_C|T, 6419_T|C, 6428_C|T, 6506_A|C, 6539_T|C, 6545_C|T, 6551_T|C, 6608_G|A, 6684_A|C, 6686_G|A, 6807_T|C, 6810_C|T, 6827_T|A, 6839_G|A, 6869_A|G, 6923_C|T,
6926_A|T, 6962_A|G, 6983_A|G, 7040_C|T, 7046_T|C, 7050_T|C, 7157_C|A, 7220_A|G, 7316_T|C, 7451_A|C, 7499_T|C, 7517_C|T, 7538_A|G, 7586_T|C, 7598_G|A, 7633_T|C, 7637_A|G, 7739_C|T, 7805_T|C,
7808_T|C, 7880_G|A, 7887_T|C, 7964_A|G, 8007_G|A, 8058_G|A, 8063_C|T, 8069_T|C, 8303_C|G, 8348_C|T, 8398_T|G, 8408_T|C, 8414_G|A, 8438_G|A, 8465_G|A, 8474_C|T, 8511_A|G, 8591_A|G, 8631_A|G,
8780_T|C, 8804_T|C, 9001_G|A, 9011_C|T, 9017_T|C, 9233_G|A, 9239_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9467_AA|CT, 9481_A|T, 9515_C|T, 9532_T|G, 9568_AA|GG, 9656_T|C, 9819_C|A,
9992_A|G, 10052_T|C, 10163_T|C, 10322_C|T, 10376_G|A, 10392_A|G, 10418_C|A, 10477_T|C, 10502_C|T, 10541_C|T, 10549_C|G, 10561_T|C, 10661_.|C, 10670_T|A
Case 4 (A.1): PQ461653.1
| Target: 995 samples | Number of changes: 186 | |
| BC: A.1 + A.1 | BC BR: 69-70 | BC BR coord: 3458 - 3459 |
| Direction L1: << | Initial region span: 1-61,114-186 | Gap history (edge excluded): 61-114 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.06e-06 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
61 |
1.489549 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
114 |
1.717957 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 150_A|C, 188_T|C, 254_A|G, 299_T|C, 398_T|C, 423_G|A, 523_A|G, 558_T|C, 653_G|A, 689_G|A, 719_T|C, 773_T|C, 779_T|C, 803_A|G, 848_C|T, 884_A|G, 953_A|G, 1175_A|G, 1559_A|G, 1607_C|T,
1616_C|T, 1775_C|T, 1787_T|C, 1815_G|A, 1826_G|A, 1871_T|C, 1976_A|G, 2036_C|T, 2066_C|T, 2129_C|T, 2219_T|C, 2233_A|G, 2312_C|A, 2375_C|T, 2411_C|T, 2435_T|C, 2448_T|C, 2471_A|G, 2486_T|C,
2504_G|A, 2522_G|A, 2525_G|A, 2537_T|C, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2879_T|C, 2925_G|A, 2948_TC|CA, 2969_C|T, 2972_G|A, 3038_T|C, 3041_T|C, 3059_G|A, 3089_C|T,
3110_T|C, 3123_C|T, 3128_G|A, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3221_C|T, 3228_T|C, 3254_T|C, 3332_G|A, 3518_C|T, 3524_A|G, 3534_G|A, 3596_G|A, 3671_A|G, 3674_T|C, 3731_C|T, 3780_C|T,
3836_T|C, 3857_C|T, 3881_T|C, 3989_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4167_C|T, 4220_G|A, 4238_C|T, 4328_C|T, 4337_A|G, 4367_T|C, 4403_A|C, 4409_A|G, 4454_G|A, 4499_C|T, 4523_G|A, 4733_T|C,
4757_T|A, 4901_G|A, 4925_G|A, 4934_G|A, 4979_C|G, 5000_T|C, 5030_C|T, 5043_G|T, 5060_T|C, 5096_T|C, 5210_G|A, 5240_C|T, 5270_T|A, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5421_C|T, 5459_T|C,
5462_T|A, 5591_T|C, 5621_C|T, 5717_C|T, 5937_T|C, 6056_C|T, 6137_T|C, 6143_T|C, 6239_T|C, 6269_C|T, 6425_G|A, 6545_C|T, 6674_C|T, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6884_A|G, 6902_C|T,
6953, 6960_C|T, 6983_A|G, 7046_T|C, 7050_T|C, 7133_A|G, 7197_C|T, 7316_T|C, 7451_A|C, 7460_C|T, 7517_C|T, 7598_G|A, 7604_T|C, 7633_T|C, 7637_A|G, 7643_A|G, 7805_T|C, 7808_T|C, 7869_C|A,
7880_G|A, 7887_T|C, 7937_C|T, 7964_A|G, 8007_G|A, 8018_A|G, 8063_C|T, 8246_A|G, 8303_C|T, 8318_T|C, 8408_T|C, 8474_C|T, 8591_A|G, 8606_C|T, 8631_A|G, 8780_T|C, 8951_C|T, 9011_C|T, 9017_T|C,
9197_G|A, 9239_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9656_T|C, 10010_T|C, 10262_T|C, 10322_C|T, 10376_G|A, 10392_A|G, 10477_T|C
Case 4 (A.1): PV426612.1
| Target: 995 samples | Number of changes: 185 | |
| BC: A.1 + A.1 | BC BR: 38-39 | BC BR coord: 2533 - 2534 |
| Direction L1: << | Initial region span: 1-37,66-185 | Gap history (edge excluded): 37-66 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.06e-02 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
37 |
1.448788 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
66 |
4.490891 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 299_T|C, 423_G|A, 482_C|T, 510_T|C, 523_A|G, 558_T|C, 584_G|A, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 837_T|C, 872_T|C, 884_A|G, 914_A|G, 953_AC|GT, 1019_T|C, 1175_A|G, 1217_C|T,
1328_T|C, 1513_C|T, 1559_A|G, 1592_T|C, 1616_C|T, 1691_C|T, 1787_T|C, 1815_G|A, 1841_C|T, 1850_T|C, 1946_C|T, 2066_C|T, 2111_T|C, 2375_C|T, 2411_C|T, 2448_T|C, 2504_G|A, 2525_G|A, 2606_C|T,
2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2799_T|C, 2879_T|C, 2925_G|A, 2949_C|A, 2969_C|T, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3218_T|A, 3228_T|C,
3254_T|C, 3332_G|A, 3350_G|A, 3425_C|T, 3482_T|C, 3518_C|T, 3534_G|A, 3551_A|G, 3596_G|A, 3671_A|G, 3731_C|T, 3800_C|T, 3812_G|A, 3836_T|C, 3857_C|T, 3881_T|C, 3950_C|T, 3989_T|C, 4013_T|C,
4106_A|G, 4133_A|T, 4199_G|T, 4220_G|A, 4274_G|A, 4325_G|A, 4337_A|G, 4403_A|C, 4409_A|G, 4454_G|A, 4481_G|A, 4499_C|T, 4523_G|A, 4925_G|A, 4934_G|A, 5000_T|C, 5030_C|T, 5060_T|C, 5096_T|C,
5279_A|G, 5369_C|T, 5375_A|G, 5384_C|T, 5387_C|T, 5411_C|T, 5421_C|T, 5423_A|G, 5459_T|C, 5555_C|T, 5591_T|C, 5630_A|G, 5717_C|T, 5801_G|A, 5828_T|C, 5858_C|T, 5864_C|T, 6056_C|T, 6068_A|G,
6143_T|C, 6185_T|C, 6404_C|T, 6419_T|C, 6428_C|T, 6506_A|C, 6539_T|C, 6545_C|T, 6551_T|C, 6608_G|A, 6684_A|C, 6686_G|A, 6807_T|C, 6810_C|T, 6827_T|A, 6839_G|A, 6869_A|G, 6923_C|T, 6926_A|T,
6962_A|G, 6983_A|G, 7046_T|C, 7050_T|C, 7157_C|A, 7220_A|G, 7316_T|C, 7451_A|C, 7499_T|C, 7517_C|T, 7586_T|C, 7598_G|A, 7633_T|C, 7637_A|G, 7805_T|C, 7808_T|C, 7880_G|A, 7887_T|C, 7964_A|G,
8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8303_C|G, 8348_C|T, 8408_T|C, 8414_G|A, 8438_G|A, 8465_G|A, 8474_C|T, 8511_A|G, 8591_A|G, 8631_A|G, 8780_T|C, 8804_T|C, 9011_C|T, 9017_T|C, 9038_A|G,
9233_G|A, 9239_T|C, 9305_C|T, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9656_T|C, 9992_A|G, 10052_T|C, 10091_T|C, 10163_T|C, 10322_C|T
Case 4 (A.1): PQ551086.1
| Target: 995 samples | Number of changes: 214 | |
| BC: A.1 + A.1 | BC BR: 5-6 | BC BR coord: 427 - 428 |
| Direction L1: << | Initial region span: 1-5,15-214 | Gap history (edge excluded): 5-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.26e-03 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
5 |
0.823532 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
15 |
9.120325 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 50_A|G, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 523_A|G, 545_T|C, 558_T|C, 578_T|C, 617_C|T, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G, 1358_G|A,
1482_A|G, 1559_A|G, 1568_C|T, 1616_C|T, 1682_C|T, 1727_C|T, 1787_T|C, 1815_G|A, 1874_A|G, 2015_G|A, 2019_G|A, 2051_G|A, 2066_C|T, 2123_T|C, 2150_C|T, 2375_C|T, 2385_A|G, 2394_A|T, 2411_C|T,
2429_T|C, 2448_T|C, 2486_T|C, 2495_G|A, 2504_G|A, 2525_G|A, 2555_T|C, 2591_C|T, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2826_C|T, 2831_C|T, 2879_T|C, 2925_G|A, 2930_T|C,
2949_C|A, 2969_C|T, 2984_T|C, 3017_A|T, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3209_T|C, 3218_T|A, 3228_T|C, 3254_T|C, 3273_A|T, 3332_G|A, 3338_T|C, 3476_T|C,
3518_C|T, 3534_G|A, 3566_T|C, 3584_G|A, 3596_G|A, 3615_C|T, 3644_C|T, 3671_A|G, 3731_C|T, 3836_T|C, 3857_C|T, 3861_C|T, 3881_T|C, 3989_T|C, 3998_C|T, 4070_T|C, 4079_G|A, 4083_T|C, 4085_T|C,
4106_A|G, 4133_A|T, 4220_G|A, 4322_C|T, 4337_A|G, 4346_T|C, 4403_A|C, 4409_A|G, 4451_G|A, 4454_G|A, 4463_G|A, 4484_G|A, 4499_C|T, 4523_G|A, 4631_T|C, 4667_C|T, 4688_A|G, 4733_T|C, 4925_G|A,
4934_G|A, 4938_A|G, 5096_T|C, 5187_T|C, 5256_A|G, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5390_C|T, 5421_C|T, 5450_T|C, 5459_T|C, 5516_T|C, 5555_C|T, 5561_C|T, 5591_T|C, 5642_A|G, 5717_C|T,
5937_T|C, 5939_G|A, 5975_C|T, 6002_T|C, 6056_C|T, 6101_T|C, 6143_T|C, 6149_C|T, 6363_C|T, 6545_C|T, 6599_G|A, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6920_A|G, 6983_A|G, 7050_T|C, 7151_T|C,
7217_C|T, 7226_A|G, 7259_G|A, 7316_T|C, 7517_C|T, 7541_C|T, 7568_T|C, 7598_G|A, 7633_T|C, 7637_A|G, 7766_C|T, 7805_T|C, 7808_T|C, 7973_A|G, 7975_A|T, 7988_C|T, 7994_T|C, 8007_G|A, 8018_A|G,
8063_C|T, 8069_T|C, 8213_A|G, 8255_G|A, 8288_C|T, 8303_C|T, 8312_T|C, 8408_T|C, 8474_C|T, 8504_T|C, 8588_T|C, 8591_A|G, 8606_C|T, 8631_A|G, 8720_T|C, 8780_T|C, 8789_T|C, 8834_C|T, 8849_C|T,
8933_T|C, 8993_C|T, 9194_A|G, 9211_G|A, 9221_T|C, 9239_T|C, 9305_C|T, 9308_T|C, 9329_C|T, 9346_A|G, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9869_T|C, 9912_AG|GC, 10027_T|C, 10178_C|T,
10322_C|T, 10361_T|C, 10372_T|C, 10376_G|A, 10392_A|G
Case 4 (A.1): PQ551087.1
| Target: 995 samples | Number of changes: 219 | |
| BC: A.1 + A.1 | BC BR: 120-121 | BC BR coord: 5287 - 5288 |
| Direction L1: << | Initial region span: 1-104,155-219 | Gap history (edge excluded): 104-155 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.49e-24 | |
| Rec. model vs L1: 2.72e+00 | Rec. model vs L2: 2.72e+00 | |
| Flags: Model_1BP_Best | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
104 |
2.871103 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
155 |
7.172924 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 50_A|G, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 523_A|G, 545_T|C, 558_T|C, 578_T|C, 617_C|T, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G, 1358_G|A,
1482_A|G, 1559_A|G, 1568_C|T, 1616_C|T, 1682_C|T, 1727_C|T, 1787_T|C, 1815_G|A, 1874_A|G, 2015_G|A, 2019_G|A, 2051_G|A, 2066_C|T, 2123_T|C, 2375_C|T, 2385_A|G, 2394_A|T, 2411_C|T, 2429_T|C,
2448_T|C, 2486_T|C, 2495_G|A, 2504_G|A, 2525_G|A, 2555_T|C, 2591_C|T, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2826_C|T, 2879_T|C, 2925_G|A, 2930_T|C, 2949_C|A, 2969_C|T,
2984_T|C, 3017_A|T, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3209_T|C, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3338_T|C, 3476_T|C, 3518_C|T, 3534_G|A, 3566_T|C,
3584_G|A, 3596_G|A, 3615_C|T, 3644_C|T, 3671_A|G, 3731_C|T, 3836_T|C, 3857_C|T, 3861_C|T, 3881_T|C, 3989_T|C, 3998_C|T, 4079_G|A, 4083_T|C, 4085_T|C, 4106_A|G, 4133_A|T, 4220_G|A, 4322_C|T,
4337_A|G, 4403_A|C, 4409_A|G, 4451_G|A, 4454_G|A, 4463_G|A, 4484_G|A, 4499_C|T, 4523_G|A, 4631_T|C, 4667_C|T, 4688_A|G, 4733_T|C, 4817_C|T, 4925_G|A, 4934_G|A, 4938_A|G, 5000_T|C, 5030_C|T,
5060_T|C, 5096_T|C, 5187_T|C, 5256_A|G, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5390_C|T, 5421_C|T, 5450_T|C, 5459_T|C, 5516_T|C, 5555_C|T, 5561_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5783_T|C,
5789_G|A, 5798_C|T, 5828_T|C, 5937_T|C, 5939_G|A, 5975_C|T, 6002_T|C, 6056_C|T, 6143_T|C, 6149_C|T, 6363_C|T, 6545_C|T, 6599_G|A, 6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6920_A|G, 6983_A|G,
7050_T|C, 7151_T|C, 7217_C|T, 7226_A|G, 7259_G|A, 7316_T|C, 7451_A|C, 7475_G|A, 7502_G|A, 7517_C|T, 7541_C|T, 7568_T|C, 7598_G|A, 7633_T|C, 7637_A|G, 7766_C|T, 7805_T|C, 7808_T|C, 7870_G|A,
7955_A|G, 7964_A|G, 7973_A|G, 7988_C|T, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8213_A|G, 8255_G|A, 8288_C|T, 8303_C|T, 8312_T|C, 8408_T|C, 8474_C|T, 8504_T|C, 8588_T|C, 8591_A|G, 8606_C|T,
8631_A|G, 8720_T|C, 8780_T|C, 8789_T|C, 8834_C|T, 8849_C|T, 8933_T|C, 8993_C|T, 9011_C|T, 9017_T|C, 9194_A|G, 9211_G|A, 9239_T|C, 9305_C|T, 9308_T|C, 9329_C|T, 9346_A|G, 9353_T|C, 9434_A|G,
9455_G|A, 9515_C|T, 9788_A|G, 9869_T|C, 9912_AG|GC, 10027_T|C, 10178_C|T, 10322_C|T, 10361_T|C
Case 4 (A.1): PQ551088.1
| Target: 995 samples | Number of changes: 234 | |
| BC: A.1 + A.1.NmC1 | BC BR: 230-231 | BC BR coord: 10391 - 10392 |
| Direction L1: >> | Initial region span: 1-230,231-234 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.22e+03 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
A.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
230 |
7.106736 |
None |
None |
None |
* |
* |
* |
| |||||
A.1.NmC1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC1 |
0 |
231 |
3.420355 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 50_A|G, 80, 188_T|C, 254_A|G, 299_T|C, 423_G|A, 444_G|A, 523_A|G, 545_T|C, 558_T|C, 578_T|C, 617_C|T, 653_G|A, 719_T|C, 773_T|C, 803_A|G, 884_A|G, 947_C|T, 953_AC|GT, 968_G|A, 1175_A|G,
1358_G|A, 1482_A|G, 1559_A|G, 1568_C|T, 1616_C|T, 1682_C|T, 1727_C|T, 1787_T|C, 1815_G|A, 1874_A|G, 2015_G|A, 2019_G|A, 2051_G|A, 2066_C|T, 2123_T|C, 2150_C|T, 2375_C|T, 2385_A|G, 2394_A|T,
2411_C|T, 2429_T|C, 2448_T|C, 2486_T|C, 2495_G|A, 2504_G|A, 2525_G|A, 2555_T|C, 2591_C|T, 2606_C|T, 2654_C|T, 2681_G|A, 2724_T|C, 2739_G|A, 2774_C|T, 2826_C|T, 2831_C|T, 2879_T|C, 2925_G|A,
2930_T|C, 2949_C|A, 2969_C|T, 2984_T|C, 3017_A|T, 3038_T|C, 3041_T|C, 3059_G|A, 3110_T|C, 3137_T|C, 3140_A|G, 3186_G|A, 3209_T|C, 3218_T|A, 3228_T|C, 3254_T|C, 3332_G|A, 3338_T|C, 3476_T|C,
3518_C|T, 3534_G|A, 3566_T|C, 3584_G|A, 3596_G|A, 3615_C|T, 3644_C|T, 3671_A|G, 3674_T|C, 3731_C|T, 3836_T|C, 3857_C|T, 3861_C|T, 3881_T|C, 3989_T|C, 3998_C|T, 4070_T|C, 4079_G|A, 4083_T|C,
4085_T|C, 4106_A|G, 4133_A|T, 4220_G|A, 4322_C|T, 4337_A|G, 4346_T|C, 4403_A|C, 4409_A|G, 4451_G|A, 4454_G|A, 4463_G|A, 4484_G|A, 4499_C|T, 4523_G|A, 4631_T|C, 4667_C|T, 4688_A|G, 4733_T|C,
4817_C|T, 4925_G|A, 4934_G|A, 4938_A|G, 5000_T|C, 5030_C|T, 5060_T|C, 5096_T|C, 5187_T|C, 5256_A|G, 5279_A|G, 5369_C|T, 5375_A|G, 5387_C|T, 5390_C|T, 5421_C|T, 5450_T|C, 5459_T|C, 5516_T|C,
5555_C|T, 5561_C|T, 5591_T|C, 5642_A|G, 5717_C|T, 5783_T|C, 5789_G|A, 5798_C|T, 5828_T|C, 5937_T|C, 5939_G|A, 5975_C|T, 6002_T|C, 6056_C|T, 6143_T|C, 6149_C|T, 6363_C|T, 6545_C|T, 6599_G|A,
6684_A|C, 6807_T|C, 6827_T|A, 6839_G|A, 6920_A|G, 6983_A|G, 7050_T|C, 7151_T|C, 7217_C|T, 7226_A|G, 7259_G|A, 7316_T|C, 7451_A|C, 7475_G|A, 7502_G|A, 7517_C|T, 7541_C|T, 7568_T|C, 7598_G|A,
7633_T|C, 7637_A|G, 7646_C|T, 7766_C|T, 7805_T|C, 7808_T|C, 7880_G|A, 7887_T|C, 7964_A|G, 7973_A|G, 7988_C|T, 8007_G|A, 8018_A|G, 8063_C|T, 8069_T|C, 8213_A|G, 8255_G|A, 8288_C|T, 8303_C|T,
8312_T|C, 8408_T|C, 8474_C|T, 8504_T|C, 8588_T|C, 8591_A|G, 8606_C|T, 8631_A|G, 8720_T|C, 8780_T|C, 8789_T|C, 8834_C|T, 8849_C|T, 8933_T|C, 8993_C|T, 9011_C|T, 9017_T|C, 9194_A|G, 9211_G|A,
9221_T|C, 9239_T|C, 9305_C|T, 9308_T|C, 9329_C|T, 9346_A|G, 9353_T|C, 9434_A|G, 9455_G|A, 9515_C|T, 9869_T|C, 9912_AG|GC, 10027_T|C, 10140_C|T, 10178_C|T, 10322_C|T, 10361_T|C, 10372_T|C,
10376_G|A, 10392_A|G, 10477_T|C, 10561_T|C, 10619_G|A
Case 5 (A.1.NmC4): PP431249.1
| Target: 0 samples | Number of changes: 42 | |
| BC: A.1.NmC2 + A.1 + A.1.NmC2 | BC BR: 28-29, 37-38 | BC BR coord: 6055 - 6056, 9295 - 9296 |
| Direction L1: >> | Initial region span: 1-28,29-37,38-42 | Gap history (edge excluded): 28-38 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.55e-03 | |
| Rec. model vs L1: 3.55e-03 | Rec. model vs L2: 2.28e-26 | |
| Flags: Model_2BP_Best | | |
A.1.NmC2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
28 |
28.439834 |
None |
None |
None |
* |
* |
* |
| |||||
A.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1 |
995 |
29 |
0.829987 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.1.NmC2 |
0 |
38 |
0.000000 |
-5.810408 |
53.620815 |
1.307027e-03 |
* |
|
|
| A.1.NmC1 |
0 |
38 |
-1.197639 |
-37.418671 |
116.837341 |
2.444759e-17 |
|
|
|
| |||||
A.1.NmC2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.1.NmC2 |
0 |
38 |
4.270669 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 254_A|G, 428_T|A, 755_T|C, 875_C|T, 881_G|T, 923_G|T, 1265_A|G, 1398_C|T, 1616_C|T, 2375_C|T, 2534_C|T, 2681_G|A, 2724_T|C, 2925_G|A, 3059_G|A, 3080_T|C, 3140_A|G, 3186_G|A, 3218_T|A,
3332_G|A, 3459_C|T, 3534_G|A, 3731_C|T, 3911_A|G, 3989_T|C, 5651_C|T, 5937_T|C, 6008_C|T, 6545_C|T, 6908_T|C, 6983_A|G, 7064_T|C, 7451_A|C, 7633_T|C, 7805_T|C, 8250_C|A, 8474_C|T, 9296_C|T,
9305_C|T, 9353_T|C, 10164_A|G, 10561_T|C